Hs03942072_cn

• Gene Symbol: TOX3
• Assay Reference Genome Location: Chr.16:52438923 on build GRCh38
• Cytoband: 16q12.1

Target Gene Details

• Entrez Gene ID: 27324
• Gene Name: TOX high mobility group box family member 3
• Gene Aliases: CAGF9, TNRC9
• Location: Chr.16:52436415-52547802 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TOX3	NM_001080430.3	7	2204	NP_001073899.2
	NM_001146188.2	8	2206	NP_001139660.1
	XM_005255892.3	7	2227	XP_005255949.1
	XM_011523002.2	7	2965	XP_011521304.1
	XM_017023142.1	7	2280	XP_016878631.1
	AK025084.1	1	924
	AK027006.1	6	1939
	AK095095.1	2	2499
	AK299202.1	8	2206
	U80736.1	3	1298	AAB91435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1066719	Chr.16:52261069 - 53107993 on Build GRCh38	Loss	LOC105371267 CHD9 CASC22 CASC16 TOX3
nsv833229	Chr.16:52331311 - 52488445 on Build GRCh38	Loss	TOX3
nsv457488	Chr.16:52434324 - 52488805 on Build GRCh38	Loss	TOX3

More Information

Additional Information:

For this assay, SNP(s) [rs144919658] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
apoptotic process
negative regulation of neuron apoptotic process
positive regulation of transcription, DNA-templated

Function(s)

chromatin binding
protein binding
estrogen response element binding
protein homodimerization activity
phosphoprotein binding