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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2282521 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03946505_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Intron 26
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SLC9A3R2 RAB11FIP3 MSRB1 MRPL28 MLST8 CHTF18 LMF1-AS1 CAPN15 UNKL LOC105371046 MIR662 AXIN1 RPL23AP5 RAB40C HAGHL TSR3 TPSB2 HBM ABCA3 NPRL3 METRN E4F1 LMF1 TPSAB1 AMDHD2 SNORA78 SSTR5-AS1 GNG13 RGS11 LUC7L MIR3677 PRSS29P WDR90 PRR25 LINC00254 C16orf59 RHBDF1 PTX4 SNRNP25 MIR6767 RNF151 TMEM8A KCTD5 RAB26 UBE2I MIR5587 CEMP1 LOC652276 PIGQ MIR1225 CCDC78 SPSB3 TRAF7 TPSG1 RPS2 LOC729652 SNORD60 NUBP2 LOC107987233 TBC1D24 NME4 HBA2 LOC105371049 NTN3 FBXL16 DECR2 FAM173A SSTR5 NDUFB10 DNASE1L2 METTL26 RHBDL1 HBZ MIR4516 WFIKKN1 TBL3 MAPK8IP3 NPW NTHL1 PKD1 IGFALS DDX11L10 LOC100287175 LOC105371038 CASKIN1 FLJ42627 TELO2 MIR6511B1 LOC101929280 HS3ST6 SNHG9 MIR940 MIR4717 MIR3176 HN1L C1QTNF8 PDPK1 ATP6V0C EME2 LOC105371047 HAGH NHLRC4 LOC106660606 GNPTG BRICD5 STUB1 ABCA17P NME3 CCNF HBA1 TMEM204 RHOT2 MSLN MPG WDR24 LOC107984876 PRSS27 GFER HBQ1 MIR3177 BAIAP3 RPL3L ECI1 C16orf91 LOC105371184 LOC100134368 MEIOB FAM234A CCDC154 MRPS34 CRAMP1 WASIR2 SNORA10 SNHG19 IFT140 MCRIP2 FAHD1 ERVK13-1 CACNA1H MIR3178 MIR3180-5 LOC105371045 TSC2 MIR6859-4 ZNF598 RPUSD1 PRR35 TPSD1 POLR3K PDIA2 RNPS1 SYNGR3 LINC00235 SOX8 MIR6768 NARFL PGP JMJD8 ARHGDIG NOXO1 CLCN7 SNORA64
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss NPW GFER SLC9A3R2 NTHL1 PKD1 ECI1 CASKIN1 RAB26 MIR6511B1 MIR940 MLST8 MIR4717 MIR1225 SNHG19 TRAF7 SNORD60 MIR3180-5 TSC2 LOC105371049 LOC106660606 ABCA3 ZNF598 BRICD5 E4F1 RNPS1 DNASE1L2 SYNGR3 MIR4516 PGP TBL3 MIR3677 NOXO1
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss RNPS1 MIR940 MIR4717 LOC106660606 ABCA3 MIR3677 ABCA17P
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain C16orf59 PKD1 ECI1 MIR6767 CASKIN1 RAB26 CEMP1 MIR6511B1 LOC652276 MIR940 MLST8 MIR4717 MIR1225 SNHG19 TRAF7 PDPK1 LOC729652 SNORD60 ATP6V0C MIR3178 MIR3180-5 TBC1D24 TSC2 LOC105371049 LOC106660606 ABCA3 NTN3 BRICD5 ABCA17P E4F1 RNPS1 DNASE1L2 CCNF AMDHD2 MIR4516 MIR6768 PGP MIR3677
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion LOC106660606 ECI1 ABCA3 BRICD5 E4F1 CASKIN1 RAB26 RNPS1 DNASE1L2 MIR940 MLST8 MIR4717 PGP SNHG19 TRAF7 MIR3677 SNORD60
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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