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See other MAPK8IP3 CNV Assays ›
Gene Symbol
MAPK8IP3
Assay Reference Genome
Location

Chr.16:1734923 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03950154_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 23162

Gene Name:

 mitogen-activated protein kinase 8 interacting protein 3

Gene Aliases:

 JIP-3, JIP3, JSAP1, SYD2, syd

Location:

 Chr.16:1706183-1770317 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MAPK8IP3 NM_001040439.1 NP_001035529.1
NM_001318852.1 NP_001305781.1
NM_015133.4 NP_055948.2
XM_005255190.2 XP_005255247.1
XM_006720869.2 XP_006720932.1
XM_011522429.2 XP_011520731.1
XM_011522430.2 XP_011520732.1
XM_011522431.2 XP_011520733.1
XM_011522432.2 XP_011520734.1
XM_017023079.1 XP_016878568.1
XM_017023080.1 XP_016878569.1
XM_017023081.1 XP_016878570.1
AB028989.2
AB621811.1
AK024437.1 BAB15727.1
BC137123.1
BC137124.1
BC144486.1
BC150266.1
BY795428.2
CN405915.1
CR749696.1 CAH18476.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571169 Chr.16:1729694 - 1789022 on Build GRCh38 Loss SPSB3 NUBP2 MRPS34 NME3 MIR3177 EME2 MAPK8IP3
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss CRAMP1 SPSB3 NUBP2 EME2 IFT140 MAPK8IP3 LOC105371046 IGFALS HAGH HN1L MRPS34 NME3 MIR3177
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SNHG19 ABCA3 LOC107987233 BRICD5 MIR940 WDR24 PRSS29P TPSD1 HBM PRSS27 TPSAB1 WFIKKN1 GNPTG MCRIP2 LOC729652 LOC105371184 LOC100134368 DDX11L10 LINC00235 DECR2 LOC107984876 NTHL1 LOC100287175 HBZ NARFL LOC106660606 RNF151 WASIR2 ERVK13-1 METTL26 PIGQ HAGHL EME2 MAPK8IP3 MRPL28 CAPN15 CACNA1H HAGH MPG KCTD5 BAIAP3 NME3 SNHG9 PDIA2 NHLRC4 TPSB2 C16orf59 RGS11 MIR4717 CCNF TBC1D24 FLJ42627 FBXL16 PRR25 METRN MSLN MLST8 TPSG1 MIR6767 MIR3180-5 LOC105371045 CHTF18 MEIOB NPW PGP HBQ1 CRAMP1 ABCA17P AXIN1 FAM173A IFT140 DNASE1L2 WDR90 GFER HBA2 CCDC154 SLC9A3R2 CEMP1 PTX4 TBL3 ATP6V0C RPS2 UBE2I LOC105371047 LOC101929280 TSR3 SNORD60 MIR1225 FAHD1 FAM234A CLCN7 ARHGDIG MIR3178 MSRB1 TSC2 PRR35 RPL23AP5 SNORA10 ECI1 MIR6768 RHBDL1 HBA1 SPSB3 LMF1 STUB1 RHBDF1 TMEM8A RAB26 LOC105371046 GNG13 PKD1 NDUFB10 LOC105371049 LOC652276 RNPS1 NME4 MIR5587 TELO2 MIR3176 POLR3K JMJD8 LUC7L NUBP2 RPL3L SNORA64 MIR3677 NPRL3 E4F1 RPUSD1 SNORA78 TRAF7 HN1L LINC00254 CCDC78 MRPS34 HS3ST6 MIR3177 MIR662 SYNGR3 UNKL MIR6859-4 RHOT2 MIR4516 SOX8 PDPK1 RAB40C LMF1-AS1 NOXO1 C16orf91 LOC105371038 AMDHD2 IGFALS SSTR5-AS1 NTN3 ZNF598 TMEM204 MIR6511B1 SNRNP25 C1QTNF8 RAB11FIP3 CASKIN1 SSTR5
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss LOC105371047 CRAMP1 SPSB3 NUBP2 FAHD1 EME2 IFT140 MAPK8IP3 LOC105371046 IGFALS HAGH HN1L MRPS34 TMEM204 TELO2 NME3 MIR3177 MEIOB
nsv1160328 Chr.16:1704619 - 1797867 on Build GRCh38 Deletion IGFALS SPSB3 NUBP2 MRPS34 NME3 MIR3177 EME2 MAPK8IP3
nsv1075908 Chr.16:1733298 - 1740499 on Build GRCh38 Duplication MIR3177 MAPK8IP3
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss CRAMP1 SPSB3 NUBP2 FAHD1 EME2 MAPK8IP3 IGFALS HAGH HN1L MRPS34 NME3 MIR3177 MEIOB
esv27589 Chr.16:1734083 - 1740698 on Build GRCh38 Loss MIR3177 MAPK8IP3
nsv952900 Chr.16:1724500 - 1827999 on Build GRCh38 Deletion IGFALS HAGH SPSB3 NUBP2 MRPS34 FAHD1 NME3 MIR3177 EME2 MAPK8IP3

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More Information


Additional Information:

For this assay, SNP(s) [rs111246013] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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