Hs03987215_cn

• Gene Symbol: SLC5A10
• Assay Reference Genome Location: Chr.17:18955735 on build GRCh38
• Cytoband: 17p11.2

Target Gene Details

• Entrez Gene ID: 125206
• Gene Name: solute carrier family 5 member 10
• Gene Aliases: SGLT-5, SGLT5
• Location: Chr.17:18950676-19020691 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SLC5A10	NM_001042450.2			NP_001035915.1
	NM_001270648.1			NP_001257577.1
	NM_001270649.1			NP_001257578.1
	NM_001282417.1			NP_001269346.1
	NM_152351.4			NP_689564.3
	XM_011523652.1			XP_011521954.1
	XM_011523653.2			XP_011521955.1
	XM_017024191.1			XP_016879680.1
	AK057946.1			BAB71619.1
	AK298345.1
	BC034380.1
	BC039868.1			AAH39868.1
	BC062617.1			AAH62617.1
	BP332461.1
	DR003789.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv574552	Chr.17:18926974 - 18987449 on Build GRCh38	Gain	FAM83G SLC5A10 PRPSAP2
nsv1055999	Chr.17:18695458 - 18973671 on Build GRCh38	Gain	LOC101929141 FAM83G TVP23B TRIM16L SLC5A10 FBXW10 PRPSAP2
esv33572	Chr.17:18919047 - 19291177 on Build GRCh38	Gain	LOC102724624 EPN2-IT1 GRAP SNORD3A SNORD3C SNORD3B-2 SNORD3B-1 GRAPL EPN2 LOC79999 SNORD3D FAM83G LOC388436 SLC5A10 PRPSAP2
esv2758678	Chr.17:18927303 - 19288734 on Build GRCh38	Gain+Loss	LOC102724624 EPN2-IT1 GRAP SNORD3A SNORD3C SNORD3B-2 SNORD3B-1 GRAPL EPN2 LOC79999 SNORD3D FAM83G LOC388436 SLC5A10 PRPSAP2
nsv1057803	Chr.17:18561260 - 19019420 on Build GRCh38	Loss	LOC101929141 ZNF286B FOXO3B FAM83G CCDC144B TBC1D28 TVP23B TRIM16L SLC5A10 FBXW10 PRPSAP2
nsv523721	Chr.17:18659407 - 19014011 on Build GRCh38	Gain	LOC101929141 ZNF286B FOXO3B FAM83G TVP23B TRIM16L SLC5A10 FBXW10 PRPSAP2
nsv953842	Chr.17:18947088 - 19049187 on Build GRCh38	Deletion	GRAP FAM83G SLC5A10
nsv833391	Chr.17:18906887 - 19238887 on Build GRCh38	Loss	LOC102724624 GRAP SNORD3A SNORD3C SNORD3B-2 SNORD3B-1 GRAPL EPN2 LOC79999 SNORD3D FAM83G LOC388436 SLC5A10 PRPSAP2
dgv565e214	Chr.17:18920166 - 19019319 on Build GRCh38	Gain	FAM83G SLC5A10 PRPSAP2
nsv428336	Chr.17:18927239 - 19288734 on Build GRCh38	Gain+Loss	LOC102724624 EPN2-IT1 GRAP SNORD3A SNORD3C SNORD3B-2 SNORD3B-1 GRAPL EPN2 LOC79999 SNORD3D FAM83G LOC388436 SLC5A10 PRPSAP2
nsv833390	Chr.17:18786912 - 18976381 on Build GRCh38	Loss	LOC101929141 FAM83G TVP23B SLC5A10 PRPSAP2
nsv9504	Chr.17:18389579 - 19238707 on Build GRCh38	Gain+Loss	LGALS9C SNORD3A KRT17P2 KRT16P1 CCDC144B TVP23B SNORD3B-2 EPN2 FAM106A FLJ35934 FAM83G KRT17P5 LOC388436 SLC5A10 FBXW10 LOC102724624 LOC101929141 GRAP ZNF286B TBC1D28 SNORD3C SNORD3B-1 GRAPL LOC79999 USP32P2 FOXO3B SNORD3D EVPLL TRIM16L PRPSAP2
dgv5491n54	Chr.17:18921239 - 19014011 on Build GRCh38	Gain	FAM83G SLC5A10 PRPSAP2
nsv470581	Chr.17:18947699 - 19014011 on Build GRCh38	Gain	FAM83G SLC5A10

More Information

Additional Information:

For this assay, SNP(s) [rs116143252] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

secondary carrier transporter

Gene Ontology Categories:

Process(es)

sodium ion transport
transmembrane transport

Function(s)

symporter activity