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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49655038 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04013553_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Within Intron 11
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC018398.1 AAH18398.1
BC053992.1 AAH53992.1
BQ896877.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss SCAF1 ADM5 RRAS PRR12 NOSIP PRMT1 CPT1C BCL2L12 IRF3 PRRG2 MIR5088
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss SCAF1 ADM5 RRAS PRR12 NOSIP PRMT1 CPT1C BCL2L12 IRF3 PRRG2 MIR5088
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss TSKS ZNF114 PLEKHA4 C19orf73 CGB2 DHDH BCL2L12 CYTH2 SNAR-A7 SNAR-A2 SNAR-A5 SNORD35B KCNJ14 PIH1D1 RPL13A PRMT1 CGB3 EMP3 PPFIA3 SLC6A16 FCGRT CARD8-AS1 IZUMO1 SNAR-C3 SNAR-C5 HRC TULP2 AKT1S1 SULT2B1 SNAR-A13 SNAR-A11 SNAR-C1 DBP IL4I1 BSPH1 PPP1R15A CCDC155 ADM5 MIR6799 BAX CGB5 SIGLEC16 SNAR-A12 FLT3LG GYS1 MIR150 MIR5088 SNAR-A3 SYNGR4 SPHK2 MIR4324 MAMSTR PTOV1-AS1 SNAR-C4 CCDC114 PLA2G4C LOC105372430 FUZ SNAR-A9 DKKL1 LOC105447645 MIR4750 MIR4749 SNAR-A4 PRR12 RASIP1 LOC100287477 MED25 VRK3 ZNF473 CGB7 SNAR-A14 PTOV1-AS2 SNAR-A8 SNAR-D LOC101059948 TBC1D17 LMTK3 TRPM4 SNORD34 IRF3 ALDH16A1 CD37 NTF4 SPACA4 KCNA7 TMEM143 GRWD1 SNAR-A10 CARD8 SNORD33 FUT2 LOC101928295 SNAR-A1 CABP5 SLC17A7 RUVBL2 FLJ26850 RRAS PLA2G4C-AS1 FAM83E HSD17B14 SNAR-A6 CPT1C LIG1 KDELR1 MIR6800 NTN5 ELSPBP1 FGF21 NOSIP SNORD32A PNKP NUCB1-AS1 SNRNP70 LIN7B SNAR-G2 PTOV1 SNAR-B2 RPL18 RPS11 SIGLEC11 NUCB1 GRIN2D CA11 GFY BCAT2 C19orf68 MIR6798 SNAR-C2 ATF5 SNORD35A CGB1 SNAR-G1 SCAF1 RCN3 LHB SNAR-B1 NUP62 FTL AP2A1 CGB8 SEC1P MIR4751 PRRG2 PTH2 TEAD2 FUT1
nsv817854 Chr.19:49618821 - 49726387 on Build GRCh38 Gain SCAF1 ADM5 RRAS PRR12 PRMT1 CPT1C BCL2L12 IRF3 MIR5088
nsv579909 Chr.19:49649784 - 49659652 on Build GRCh38 Loss SCAF1 IRF3
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion ADM5 TSKS PTOV1 MIR6799 PTOV1-AS2 TBC1D17 BCL2L12 IRF3 MIR5088 ATF5 PRMT1 PTOV1-AS1 FUZ SCAF1 RRAS AKT1S1 NUP62 MIR4750 CPT1C MIR4749 AP2A1 MIR6800 PRR12 NOSIP IL4I1 MED25 MIR4751 PNKP PRRG2
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain SCAF1 ADM5 RRAS PRR12 NOSIP PRMT1 CPT1C BCL2L12 IRF3 PRRG2 MIR5088
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion ADM5 TSKS MIR6799 RPS11 BCL2L12 MIR150 SNORD34 IRF3 MIR5088 SNORD35B SNORD35A RPL13A PRMT1 PTOV1-AS1 SNORD33 FCGRT FUZ SCAF1 RCN3 RRAS CPT1C AP2A1 MIR6800 PRR12 NOSIP MED25 SNORD32A PRRG2
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss SCAF1 RRAS PRR12 NOSIP PRMT1 BCL2L12 IRF3 PRRG2
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss SCAF1 IRF3

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