Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Intron 25 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 CABP5
PLA2G4C
PLA2G4C-AS1
ELSPBP1
BSPH1
C19orf68
LIG1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
MIR6798
PPP1R15A
RUVBL2
HRC
LOC105372430
SNAR-A1
CGB8
CABP5
PPFIA3
SNAR-A3
TMEM143
SPACA4
IRF3
MIR5088
BSPH1
FTL
SNORD32A
TRPM4
TEAD2
SNAR-B2
PLEKHA4
SNRNP70
ZNF114
PTH2
KCNJ14
FUT1
GFY
SNORD35B
SNORD35A
FUZ
PIH1D1
MIR4751
SCAF1
FLT3LG
TULP2
NTN5
CARD8-AS1
SNAR-C1
RPL18
FUT2
FGF21
ZNF473
MIR4749
SNAR-B1
SNAR-G2
MIR6799
SNAR-C4
LMTK3
SNAR-D
PLA2G4C-AS1
CA11
SNAR-A7
GYS1
NUP62
KCNA7
MIR6800
TSKS
MAMSTR
C19orf68
MIR150
PNKP
DKKL1
KDELR1
AKT1S1
CCDC155
SNAR-A11
PRMT1
SYNGR4
ATF5
LOC101928295
NTF4
ADM5
SLC6A16
ELSPBP1
DBP
CPT1C
GRIN2D
LOC101059948
SLC17A7
SNAR-G1
PTOV1
CCDC114
PTOV1-AS1
RCN3
DHDH
CGB7
SNAR-A12
MED25
SNAR-A9
LIN7B
LOC100287477
SIGLEC11
TBC1D17
SNAR-A8
EMP3
RASIP1
SPHK2
FAM83E
SNAR-A4
RPL13A
NOSIP
SULT2B1
FLJ26850
NUCB1
SNAR-A2
MIR4750
SNAR-C5
RRAS
SEC1P
SNAR-A6
VRK3
PLA2G4C
C19orf73
LHB
MIR4324
BAX
SNAR-A13
PRRG2
AP2A1
CGB3
GRWD1
LOC105447645
PRR12
HSD17B14
SNAR-A10
IZUMO1
CGB2
CD37
BCAT2
SNAR-C2
CGB1
SNAR-A14
IL4I1
ALDH16A1
LIG1
SNORD34
CYTH2
FCGRT
SNAR-C3
SNAR-A5
RPS11
SIGLEC16
CGB5
NUCB1-AS1
SNORD33
CARD8
PTOV1-AS2
BCL2L12
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
CABP5
SYNGR4
PLA2G4C
PLA2G4C-AS1
TMEM143
ELSPBP1
C19orf68
CARD8-AS1
LIG1
GRIN2D
KDELR1
ZNF114
CCDC114
CARD8
EMP3
|
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Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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