Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Intron 18 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 C19orf68
PLA2G4C
PLA2G4C-AS1
LIG1
CABP5
BSPH1
ELSPBP1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SULT2B1
PLEKHA4
FAM83E
HSD17B14
FCGRT
MIR6798
EMP3
TMEM143
FLJ26850
SNAR-A13
PTOV1-AS1
PNKP
TRPM4
FGF21
LOC105372430
MIR4749
LIN7B
LHB
SNAR-A5
SNAR-C2
RPS11
TULP2
DHDH
ADM5
SNAR-A12
NOSIP
SNAR-B2
AP2A1
SNAR-B1
MIR6799
LOC100287477
CA11
CGB5
CGB1
FUT2
VRK3
FTL
CGB3
SPHK2
PPFIA3
LOC101928295
TSKS
SNORD32A
KDELR1
FUZ
PPP1R15A
AKT1S1
RUVBL2
IRF3
CGB8
SNAR-C1
CARD8
KCNA7
SNAR-C3
SNAR-A8
PTOV1-AS2
SLC17A7
SNAR-A2
NTF4
MIR150
LOC101059948
RPL13A
DBP
SNAR-A9
GYS1
SEC1P
PTH2
IL4I1
CD37
PRRG2
PRR12
ZNF114
C19orf68
SNAR-A4
NUP62
ELSPBP1
LOC105447645
RASIP1
SNORD35A
NUCB1-AS1
CARD8-AS1
MIR5088
CGB2
SCAF1
ATF5
SNAR-A11
MED25
HRC
DKKL1
FUT1
SPACA4
RCN3
CYTH2
SNAR-C4
RRAS
SNAR-A14
SNORD35B
CPT1C
BCAT2
SNAR-A7
NUCB1
CCDC155
MIR6800
TBC1D17
SNAR-D
CABP5
SNAR-A3
SNAR-A1
PRMT1
SLC6A16
SYNGR4
BCL2L12
RPL18
PLA2G4C-AS1
CGB7
SNRNP70
NTN5
MIR4324
SNAR-G1
SNAR-C5
ALDH16A1
LMTK3
SNAR-A10
SNAR-G2
PLA2G4C
IZUMO1
GRIN2D
SIGLEC16
GRWD1
C19orf73
GFY
MIR4751
SNORD33
BAX
BSPH1
PIH1D1
FLT3LG
CCDC114
MIR4750
PTOV1
SNAR-A6
SIGLEC11
SNORD34
TEAD2
LIG1
ZNF473
MAMSTR
KCNJ14
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
SYNGR4
CARD8
ZNF114
C19orf68
PLA2G4C-AS1
EMP3
ELSPBP1
CARD8-AS1
CCDC114
TMEM143
KDELR1
PLA2G4C
LIG1
CABP5
GRIN2D
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
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Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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