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See other RTN4R CNV Assays ›
Gene Symbol
RTN4R
Assay Reference Genome
Location

Chr.22:20246191 on build GRCh38
Cytoband
22q11.21
Assay ID Hs04082030_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 65078

Gene Name:

 reticulon 4 receptor

Gene Aliases:

 NGR, NOGOR

Location:

 Chr.22:20241415-20268293 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RTN4R NM_023004.5 NP_075380.1
AF283463.1 AAG53612.1
AL834449.1 CAD39109.1
BC011787.1 AAH11787.1
BM762412.1
CR456360.1 CAG30246.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1064701 Chr.22:20208946 - 20248450 on Build GRCh38 Gain RTN4R
esv3893434 Chr.22:19470889 - 20343372 on Build GRCh38 Gain UFD1L LOC101927859 TBX1 LOC440792 LOC284865 CDC45 CCDC188 LINC00895 MIR4761 LINC00896 TRMT2A MIR1306 DGCR6L SEPT5 MIR185 GP1BB GNB1L TXNRD2 RTN4R C22orf29 MIR6816 ARVCF COMT MIR1286 TANGO2 CLDN5 RANBP1 SEPT5-GP1BB MIR3618 DGCR8 ZDHHC8
nsv828938 Chr.22:19691069 - 20324465 on Build GRCh38 Gain TBX1 LOC440792 LOC284865 CCDC188 MIR4761 LINC00896 TRMT2A MIR1306 DGCR6L SEPT5 MIR185 GP1BB GNB1L TXNRD2 RTN4R C22orf29 MIR6816 ARVCF COMT MIR1286 TANGO2 RANBP1 SEPT5-GP1BB MIR3618 DGCR8 ZDHHC8
esv3893435 Chr.22:20230714 - 20307897 on Build GRCh38 Gain MIR1286 LOC440792 RTN4R
nsv1060294 Chr.22:20158003 - 20248450 on Build GRCh38 Gain LINC00896 RTN4R LOC284865
nsv471183 Chr.22:20018517 - 20319470 on Build GRCh38 Loss MIR185 LOC440792 RTN4R LOC284865 CCDC188 MIR6816 MIR1286 TANGO2 RANBP1 LINC00896 TRMT2A MIR3618 MIR1306 DGCR6L DGCR8 ZDHHC8
dgv7983n54 Chr.22:19762002 - 20321870 on Build GRCh38 Gain MIR185 GNB1L TXNRD2 TBX1 LOC440792 RTN4R C22orf29 LOC284865 CCDC188 MIR6816 ARVCF COMT MIR1286 TANGO2 RANBP1 MIR4761 LINC00896 TRMT2A MIR3618 MIR1306 DGCR6L DGCR8 ZDHHC8
dgv726n67 Chr.22:20070444 - 20324465 on Build GRCh38 Gain LOC440792 RTN4R LOC284865 CCDC188 MIR6816 MIR1286 RANBP1 LINC00896 TRMT2A MIR3618 MIR1306 DGCR6L DGCR8 ZDHHC8
nsv834134 Chr.22:20138527 - 20257923 on Build GRCh38 Loss MIR1286 LINC00896 RTN4R LOC284865 CCDC188 ZDHHC8
esv2758825 Chr.22:20038970 - 20321924 on Build GRCh38 Loss LOC440792 RTN4R LOC284865 CCDC188 MIR6816 MIR1286 TANGO2 RANBP1 LINC00896 TRMT2A MIR3618 MIR1306 DGCR6L DGCR8 ZDHHC8
nsv828939 Chr.22:19696032 - 20324465 on Build GRCh38 Loss TBX1 LOC440792 LOC284865 CCDC188 MIR4761 LINC00896 TRMT2A MIR1306 DGCR6L SEPT5 MIR185 GP1BB GNB1L TXNRD2 RTN4R C22orf29 MIR6816 ARVCF COMT MIR1286 TANGO2 RANBP1 SEPT5-GP1BB MIR3618 DGCR8 ZDHHC8
dgv4480n100 Chr.22:20069620 - 20262667 on Build GRCh38 Gain MIR1286 RANBP1 LINC00896 TRMT2A MIR3618 RTN4R MIR1306 LOC284865 CCDC188 MIR6816 DGCR8 ZDHHC8
dgv4481n100 Chr.22:20114567 - 20291605 on Build GRCh38 Gain MIR1286 RANBP1 LINC00896 TRMT2A RTN4R LOC284865 CCDC188 MIR6816 ZDHHC8
dgv4482n100 Chr.22:20184066 - 20280182 on Build GRCh38 Gain MIR1286 LINC00896 RTN4R LOC284865
nsv953027 Chr.22:20085378 - 20303977 on Build GRCh38 Deletion LOC440792 RTN4R LOC284865 CCDC188 MIR6816 MIR1286 RANBP1 LINC00896 TRMT2A MIR3618 MIR1306 DGCR8 ZDHHC8

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More Information


Additional Information:

For this assay, SNP(s) [rs117611205] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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