Hs04205923_cn

• Gene Symbol: YY1AP1
• Assay Reference Genome Location: Chr.1:155662152 on build GRCh38
• Cytoband: 1q22

Target Gene Details

• Entrez Gene ID: 55249
• Gene Name: YY1 associated protein 1
• Gene Aliases: HCCA1, HCCA2, YAP, YY1AP
• Location: Chr.1:155659442-155689032 on Build GRCh38
• Assay Gene Location: Within Intron 12

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
YY1AP1	NM_001198899.1			NP_001185828.1
	NM_001198900.1			NP_001185829.1
	NM_001198901.1			NP_001185830.1
	NM_001198902.1			NP_001185831.1
	NM_001198903.1			NP_001185832.1
	NM_001198904.1			NP_001185833.1
	NM_001198905.1			NP_001185834.1
	NM_001198906.1			NP_001185835.1
	NM_018253.3			NP_060723.2
	NM_139118.2			NP_620829.1
	NM_139119.2			NP_620830.1
	NM_139121.2			NP_620832.1
	AF203474.1			AAO13249.1
	AF206328.1			AAL74055.1
	AF466401.1			AAL75971.1
	AK001737.1			BAA91871.1
	AK023976.1			BAB14748.1
	AK125590.1
	AK225883.1
	AK297562.1
	AK298904.1
	AK303386.1
	AK303944.1
	AK309701.1
	AK315049.1
	AY604179.1			AAT34990.1
	BC001655.2			AAH01655.2
	BC001843.2			AAH01843.2
	BC008766.2			AAH08766.2
	BC009358.2			AAH09358.2
	BC014906.2			AAH14906.1
	BC044887.1			AAH44887.1
	CR749789.1			CAH18650.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv436522	Chr.1:155589722 - 155704458 on Build GRCh38	Deletion	SCARNA26A DAP3 YY1AP1 MSTO1
esv2718418	Chr.1:155562286 - 155688336 on Build GRCh38	Deletion	SCARNA26A ASH1L ASH1L-AS1 DAP3 YY1AP1 MSTO1
esv3587628	Chr.1:155619701 - 155695480 on Build GRCh38	Gain	SCARNA26A DAP3 YY1AP1
nsv428246	Chr.1:155588406 - 155816040 on Build GRCh38	Gain	SCARNA26A LOC100505728 GON4L DAP3 SCARNA26B YY1AP1 MSTO2P MSTO1
esv33869	Chr.1:155253492 - 155948170 on Build GRCh38	Loss	FAM189B CLK2 RUSC1 ASH1L-AS1 FDPS SYT11 RUSC1-AS1 KIAA0907 RIT1 SCARNA26A MIR555 HCN3 GON4L PKLR SNORA80E SCAMP3 ARHGEF2 RXFP4 LOC100505728 LOC105371451 SCARNA26B YY1AP1 MSTO2P MSTO1 ASH1L SCARNA4 DAP3 POU5F1P4
esv2718429	Chr.1:155648347 - 155763436 on Build GRCh38	Deletion	SCARNA26A LOC100505728 GON4L DAP3 YY1AP1 MSTO2P
nsv547965	Chr.1:155593361 - 155718809 on Build GRCh38	Gain	SCARNA26A DAP3 YY1AP1 MSTO1

More Information

Additional Information:

For this assay, SNP(s) [rs199595815] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor, gene-specific transcriptional regulator

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of cell cycle

Function(s)

protein binding