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See other ARHGEF4 CNV Assays ›
Gene Symbol
ARHGEF4
Assay Reference Genome
Location

Chr.2:130849505 on build GRCh38
Cytoband
2q21.1
Assay ID Hs04232427_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 50649

Gene Name:

 Rho guanine nucleotide exchange factor 4

Gene Aliases:

 ASEF, ASEF1, GEF4, STM6

Location:

 Chr.2:130836916-131047253 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ARHGEF4 XM_005263681.1 XP_005263738.1
XM_005263685.3 XP_005263742.1
XM_011511274.2 XP_011509576.1
XM_017004231.1 XP_016859720.1
AK127124.1

Target Gene Details

Entrez Gene ID:

 653269

Gene Name:

 POTE ankyrin domain family member I

Gene Aliases:

 POTE2beta

Location:

 Chr.2:130462245-131626428 on Build GRCh38

Assay Gene Location:
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
POTEI

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4074n100 Chr.2:130550793 - 131291209 on Build GRCh38 Gain POTEJ TISP43 PLEKHB2 GPR148 FAM168B CFC1 AMER3 LOC440910 ARHGEF4 CYP4F30P POTEI POTEE
dgv731e199 Chr.2:130678437 - 131300107 on Build GRCh38 Deletion PLEKHB2 GPR148 FAM168B AMER3 LOC440910 ARHGEF4 CYP4F30P POTEI POTEE
esv2670824 Chr.2:130625264 - 131605218 on Build GRCh38 Deletion MZT2A GPR148 FAM168B TUBA3D POTEKP CYP4F30P POTEI LINC01120 POTEJ LOC150776 MIR4784 CCDC74A PLEKHB2 NOC2LP2 AMER3 WTH3DI LOC440910 ARHGEF4 POTEE
dgv4075n100 Chr.2:130720375 - 131521740 on Build GRCh38 Gain MZT2A GPR148 FAM168B TUBA3D POTEI LINC01120 LOC150776 MIR4784 PLEKHB2 NOC2LP2 AMER3 WTH3DI LOC440910 ARHGEF4 POTEE
nsv2925 Chr.2:130841107 - 130887218 on Build GRCh38 Deletion ARHGEF4 POTEI
nsv517274 Chr.2:130845653 - 130865593 on Build GRCh38 Loss ARHGEF4 POTEI
esv3893337 Chr.2:130722838 - 131194387 on Build GRCh38 Loss PLEKHB2 GPR148 FAM168B AMER3 ARHGEF4 POTEI
dgv616e201 Chr.2:130674635 - 131312550 on Build GRCh38 Deletion PLEKHB2 GPR148 FAM168B AMER3 LOC440910 ARHGEF4 CYP4F30P POTEI POTEE
nsv583135 Chr.2:130724905 - 131194388 on Build GRCh38 Loss PLEKHB2 GPR148 FAM168B AMER3 ARHGEF4 POTEI
nsv10177 Chr.2:130849514 - 130851657 on Build GRCh38 Loss ARHGEF4 POTEI
nsv524021 Chr.2:130724906 - 131553515 on Build GRCh38 Loss MZT2A GPR148 FAM168B TUBA3D POTEI LINC01120 LOC150776 MIR4784 CCDC74A PLEKHB2 NOC2LP2 AMER3 WTH3DI LOC440910 ARHGEF4 POTEE
esv2760576 Chr.2:130634172 - 131521752 on Build GRCh38 Gain+Loss MZT2A GPR148 FAM168B TUBA3D CYP4F30P POTEI LINC01120 POTEJ LOC150776 MIR4784 PLEKHB2 NOC2LP2 AMER3 WTH3DI LOC440910 ARHGEF4 POTEE
esv2759092 Chr.2:129589265 - 132440430 on Build GRCh38 Gain+Loss FAM201B MZT2A TISP43 RAB6C GPR148 MED15P9 FAR2P2 IMP4 MIR663B LINC01120 CCDC74A TUBA3E NOC2LP1 LOC440910 MZT2B LINC01087 CFC1B FAR2P1 CYP4F30P ZNF806 LOC100507460 LOC150776 CYP4F62P NOC2LP2 GPR39 RAB6C-AS1 CCDC74B TUBA3D POTEKP POTEJ LOC646743 SMPD4 WTH3DI PTPN18 C2orf27B LOC107985778 LOC101927924 FAM168B CFC1 C2orf27A POTEI MIR4784 CCDC115 PLEKHB2 POTEF AMER3 ARHGEF4 ANKRD30BL LOC389033 POTEE
nsv428403 Chr.2:129818076 - 130882067 on Build GRCh38 Loss CCDC74B TISP43 RAB6C GPR148 MED15P9 FAR2P2 IMP4 POTEJ LOC646743 TUBA3E SMPD4 NOC2LP1 PTPN18 LOC107985778 LOC101927924 MZT2B CFC1 CFC1B FAR2P1 CYP4F30P POTEI CCDC115 CYP4F62P POTEF AMER3 ARHGEF4 LOC389033 RAB6C-AS1
nsv523500 Chr.2:130835472 - 130853759 on Build GRCh38 Loss ARHGEF4 POTEI

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More Information


Additional Information:

For this assay, SNP(s) [rs114857079,rs201960150] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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