Hs04422048_cn

• Gene Symbol: SPATA13
• Assay Reference Genome Location: Chr.13:24253445 on build GRCh38
• Cytoband: 13q12.12

Target Gene Details

• Entrez Gene ID: 221178
• Gene Name: spermatogenesis associated 13
• Gene Aliases: ARHGEF29, ASEF2
• Location: Chr.13:23979626-24307074 on Build GRCh38
• Assay Gene Location: Within Intron 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATA13	NM_001166271.2			NP_001159743.1
	NM_001286792.1			NP_001273721.1
	NM_153023.3			NP_694568.1
	AK055770.1			BAB71009.1
	AK299981.1
	AK301149.1
	BC109290.1			AAI09291.1
	BC109291.1			AAI09292.1
	BX648244.1

Target Gene Details

• Entrez Gene ID: 100874231
• Gene Name: SPATA13 antisense RNA 1
• Gene Aliases: -
• Location: Chr.13:24252749-24254439 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATA13-AS1	NR_046531.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv561292	Chr.13:23025847 - 24348376 on Build GRCh38	Loss	NUS1P3 SGCG SPATA13 TNFRSF19 LINC00566 MIR2276 MIPEP C1QTNF9B SPATA13-AS1 LINC00327 SACS-AS1 C1QTNF9 C1QTNF9B-AS1 SACS ANKRD20A19P
esv3892310	Chr.13:24212887 - 24577193 on Build GRCh38	Gain	NUS1P3 SPATA13-AS1 SPATA13 PARP4 C1QTNF9 LOC105370295 LOC101927375 LINC00566
esv3892311	Chr.13:22674660 - 24411768 on Build GRCh38	Gain	NUS1P3 SGCG SPATA13 BASP1P1 TNFRSF19 LINC00621 LINC00566 MIR2276 MIPEP C1QTNF9B SPATA13-AS1 LOC105370109 LINC00327 SACS-AS1 C1QTNF9 C1QTNF9B-AS1 SACS ANKRD20A19P
esv2751137	Chr.13:24152887 - 24381918 on Build GRCh38	Gain	NUS1P3 SPATA13-AS1 SPATA13 C1QTNF9 LINC00566 MIR2276
esv2422202	Chr.13:24123445 - 24316790 on Build GRCh38	Duplication	SPATA13-AS1 SPATA13 C1QTNF9 MIR2276
esv3580576	Chr.13:22945778 - 24362710 on Build GRCh38	Loss	NUS1P3 SGCG SPATA13 TNFRSF19 LINC00566 MIR2276 MIPEP C1QTNF9B SPATA13-AS1 LINC00327 SACS-AS1 C1QTNF9 C1QTNF9B-AS1 SACS ANKRD20A19P
esv2422502	Chr.13:22755560 - 24382791 on Build GRCh38	Duplication	NUS1P3 SGCG SPATA13 BASP1P1 TNFRSF19 LINC00621 LINC00566 MIR2276 MIPEP C1QTNF9B SPATA13-AS1 LOC105370109 LINC00327 SACS-AS1 C1QTNF9 C1QTNF9B-AS1 SACS ANKRD20A19P
nsv525965	Chr.13:22937442 - 24358507 on Build GRCh38	Gain	NUS1P3 SGCG SPATA13 TNFRSF19 LINC00566 MIR2276 MIPEP C1QTNF9B SPATA13-AS1 LINC00327 SACS-AS1 C1QTNF9 C1QTNF9B-AS1 SACS ANKRD20A19P
nsv1050731	Chr.13:24053479 - 24269206 on Build GRCh38	Gain	SPATA13-AS1 SPATA13 MIR2276
dgv3084n54	Chr.13:22925582 - 24378278 on Build GRCh38	Gain	NUS1P3 SGCG SPATA13 TNFRSF19 LINC00566 MIR2276 MIPEP C1QTNF9B SPATA13-AS1 LINC00327 SACS-AS1 C1QTNF9 C1QTNF9B-AS1 SACS ANKRD20A19P
esv3631540	Chr.13:24011626 - 24381597 on Build GRCh38	Gain	NUS1P3 SPATA13-AS1 SPATA13 C1QTNF9 LINC00566 MIR2276
dgv1615n100	Chr.13:22930769 - 24362849 on Build GRCh38	Gain	NUS1P3 SGCG SPATA13 TNFRSF19 LINC00566 MIR2276 MIPEP C1QTNF9B SPATA13-AS1 LINC00327 SACS-AS1 C1QTNF9 C1QTNF9B-AS1 SACS ANKRD20A19P
esv3582215	Chr.13:24193682 - 24455263 on Build GRCh38	Gain	NUS1P3 SPATA13-AS1 SPATA13 PARP4 C1QTNF9 LINC00566
esv2751136	Chr.13:22982261 - 24393377 on Build GRCh38	Loss	NUS1P3 SGCG SPATA13 TNFRSF19 LINC00566 MIR2276 MIPEP C1QTNF9B SPATA13-AS1 LINC00327 SACS-AS1 C1QTNF9 C1QTNF9B-AS1 SACS ANKRD20A19P

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

guanyl-nucleotide exchange factor

Gene Ontology Categories:

Process(es)

cell migration
lamellipodium assembly
regulation of cell migration
regulation of Rho protein signal transduction
positive regulation of GTPase activity
filopodium assembly

Function(s)

guanyl-nucleotide exchange factor activity
protein binding
Rac guanyl-nucleotide exchange factor activity