Hs04590993_cn

• Gene Symbol: CTDSP1
• Assay Reference Genome Location: Chr.2:218401830 on build GRCh38
• Cytoband: 2q35

Target Gene Details

• Entrez Gene ID: 58190
• Gene Name: CTD small phosphatase 1
• Gene Aliases: NIF3, NLI-IF, NLIIF, SCP1
• Location: Chr.2:218398338-218405941 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CTDSP1	NM_001206878.1			NP_001193807.1
	NM_021198.2			NP_067021.1
	NM_182642.2			NP_872580.1
	XM_011511569.2			XP_011509871.1
	XM_011511570.2			XP_011509872.1
	XM_017004615.1			XP_016860104.1
	XM_017004616.1			XP_016860105.1
	XM_017004617.1			XP_016860106.1
	XM_017004618.1			XP_016860107.1
	AF229162.1			AAG15402.1
	AY279529.1			AAP34397.1
	AY279530.1			AAP34398.1
	BC012977.2			AAH12977.1
	BX424971.2
	BX446444.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv519829	Chr.2:218286495 - 218403058 on Build GRCh38	Loss	CATIP MIR26B TMBIM1 SLC11A1 MIR6810 CTDSP1 CATIP-AS1 CATIP-AS2 PNKD
nsv3166	Chr.2:218371765 - 218405183 on Build GRCh38	Insertion	MIR26B SLC11A1 CTDSP1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of protein phosphorylation
regulation of transcription from RNA polymerase II promoter
protein dephosphorylation
negative regulation of neuron differentiation
negative regulation of G1/S transition of mitotic cell cycle

Function(s)

protein binding
CTD phosphatase activity
metal ion binding