Hs04603762_cn

• Gene Symbol: GCA
• Assay Reference Genome Location: Chr.2:162343033 on build GRCh38
• Cytoband: 2q24.2

Target Gene Details

• Entrez Gene ID: 25801
• Gene Name: grancalcin
• Gene Aliases: GCL
• Location: Chr.2:162318768-162371605 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GCA	XM_006712398.3			XP_006712461.1
	XM_006712400.3			XP_006712463.1
	XM_006712401.3			XP_006712464.1
	XM_017003764.1			XP_016859253.1
	XM_017003765.1			XP_016859254.1
	XM_017003766.1			XP_016859255.1
	XM_017003769.1			XP_016859258.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv583520	Chr.2:162267541 - 162611723 on Build GRCh38	Loss	IFIH1 KCNH7 GCA

More Information

Additional Information:

For this assay, SNP(s) [rs79785221] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

proteolysis
membrane fusion

Function(s)

calcium-dependent cysteine-type endopeptidase activity
calcium ion binding
protein binding
protein homodimerization activity
protein heterodimerization activity