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See other SMYD1 CNV Assays ›
Gene Symbol
SMYD1
Assay Reference Genome
Location

Chr.2:88077463 on build GRCh38
Cytoband
2p11.2
Assay ID Hs04655492_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 150572

Gene Name:

 SET and MYND domain containing 1

Gene Aliases:

 BOP, KMT3D, ZMYND18, ZMYND22

Location:

 Chr.2:88067780-88113384 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMYD1 NM_198274.3 NP_938015.1
XM_005264156.2 XP_005264213.1
AK091724.1 BAC03732.1
AL832035.1 CAI46139.1
AY518933.1 AAT44535.1
BC126191.1
BX647878.1 CAI46077.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv61n16 Chr.2:87343737 - 90254660 on Build GRCh38 Deletion MIR4436A EIF2AK3 IGKV1D-13 LOC730268 SMYD1 IGKV1D-8 LOC101928403 IGK MIR4435-1 FOXI3 RPIA IGKV1-5 IGKV2-24 IGKV3D-15 LOC101927050 MIR4780 LINC00152 PLGLB2 IGKV3-20 LOC107985911 FABP1 ANKRD36BP2 THNSL2 IGKV2-26 IGKC LOC101928371 RGPD2 IGKV2-29 TEX37 KRCC1
dgv6947n54 Chr.2:87815738 - 88850700 on Build GRCh38 Gain MIR4436A EIF2AK3 SMYD1 MIR4780 LOC101928403 FABP1 ANKRD36BP2 THNSL2 LOC101928371 FOXI3 RPIA RGPD2 TEX37 KRCC1
nsv1072005 Chr.2:87360367 - 90256528 on Build GRCh38 Deletion MIR4436A EIF2AK3 IGKV1D-13 LOC730268 SMYD1 IGKV1D-8 LOC101928403 IGK MIR4435-1 FOXI3 RPIA IGKV1-5 IGKV2-24 IGKV3D-15 LOC101927050 MIR4780 LINC00152 PLGLB2 IGKV3-20 LOC107985911 FABP1 ANKRD36BP2 THNSL2 IGKV2-26 IGKC LOC101928371 RGPD2 IGKV2-29 TEX37 KRCC1
nsv1130752 Chr.2:87360364 - 90256525 on Build GRCh38 Deletion MIR4436A EIF2AK3 IGKV1D-13 LOC730268 SMYD1 IGKV1D-8 LOC101928403 IGK MIR4435-1 FOXI3 RPIA IGKV1-5 IGKV2-24 IGKV3D-15 LOC101927050 MIR4780 LINC00152 PLGLB2 IGKV3-20 LOC107985911 FABP1 ANKRD36BP2 THNSL2 IGKV2-26 IGKC LOC101928371 RGPD2 IGKV2-29 TEX37 KRCC1
nsv582384 Chr.2:87987149 - 88773214 on Build GRCh38 Loss EIF2AK3 SMYD1 MIR4780 LOC101928403 FABP1 ANKRD36BP2 THNSL2 LOC101928371 FOXI3 RPIA RGPD2 TEX37 KRCC1
nsv582386 Chr.2:88035188 - 89208087 on Build GRCh38 Loss MIR4436A EIF2AK3 IGKV2-24 SMYD1 MIR4780 LOC101928403 IGKV3-20 IGK FABP1 ANKRD36BP2 THNSL2 IGKV2-26 IGKC LOC101928371 FOXI3 RPIA TEX37 KRCC1 IGKV1-5
nsv582383 Chr.2:87915816 - 88527080 on Build GRCh38 Gain FABP1 THNSL2 FOXI3 SMYD1 MIR4780 RGPD2 TEX37 KRCC1

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