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See other FAM189A1 CNV Assays ›
Gene Symbol
FAM189A1
Assay Reference Genome
Location

Chr.15:29135819 on build GRCh38
Cytoband
15q13.1
Assay ID Hs05328401_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 23359

Gene Name:

 family with sequence similarity 189 member A1

Gene Aliases:

 TMEM228

Location:

 Chr.15:29120252-29570723 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FAM189A1 NM_015307.1 NP_056122.1
XM_011521407.2 XP_011519709.1
AB011146.1 BAA25500.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1040778 Chr.15:28689598 - 30515727 on Build GRCh38 Loss GOLGA6L7P LOC100130111 CHRFAM7A WHAMMP2 GOLGA8T LOC101060569 GOLGA8J FAM189A1 GOLGA8M LOC105370751 LOC105370746 GOLGA8R LOC100289656 DKFZP434L187 APBA2 ULK4P3 TJP1 LOC107984752 PDCD6IPP2 NSMCE3
nsv515798 Chr.15:29068198 - 29146274 on Build GRCh38 Gain+Loss APBA2 FAM189A1
nsv471232 Chr.15:29087561 - 29139979 on Build GRCh38 Loss APBA2 FAM189A1
nsv527255 Chr.15:28754022 - 30074044 on Build GRCh38 Gain GOLGA6L7P LOC100289656 LOC100130111 WHAMMP2 APBA2 TJP1 FAM189A1 LOC107984752 PDCD6IPP2 NSMCE3
esv2751526 Chr.15:28724519 - 30687025 on Build GRCh38 Loss GOLGA6L7P LOC100130111 CHRFAM7A WHAMMP2 ULK4P2 GOLGA8J LOC101927579 FAM189A1 GOLGA8R LOC100288637 DKFZP434L187 ULK4P3 ARHGAP11B TJP1 PDCD6IPP2 GOLGA8T LOC101060569 GOLGA8H LOC105370751 LOC105370746 LOC100289656 APBA2 LOC100996413 LOC107984752 NSMCE3
nsv1039798 Chr.15:28724126 - 30158154 on Build GRCh38 Gain GOLGA6L7P LOC100130111 WHAMMP2 GOLGA8T GOLGA8J FAM189A1 LOC100289656 APBA2 ULK4P3 TJP1 LOC107984752 PDCD6IPP2 NSMCE3
nsv568675 Chr.15:29035149 - 29916451 on Build GRCh38 Gain LOC100130111 APBA2 TJP1 FAM189A1 NSMCE3
nsv524362 Chr.15:29089598 - 29155854 on Build GRCh38 Loss APBA2 FAM189A1

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More Information


Additional Information:

For this assay, SNP(s) [rs116204844] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

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