Hs05404299_cn

• Gene Symbol: CDH15
• Assay Reference Genome Location: Chr.16:89174176 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 1013
• Gene Name: cadherin 15
• Gene Aliases: CDH14, CDH3, CDHM, MCAD, MRD3
• Location: Chr.16:89171755-89195492 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDH15	NM_004933.2			NP_004924.1
	AK308596.1
	AK308631.1
	BC008951.2			AAH08951.1
	D83542.1			BAA12012.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv952072	Chr.16:89032193 - 89201992 on Build GRCh38	Deletion	CDH15 ACSF3 LINC00304 SLC22A31 LOC400558
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	ZNF778 CTU2 CDH15 LINC00304 PABPN1L CDT1 LOC100129697 CBFA2T3 MIR4722 LOC100289580 ACSF3 LOC339059 LOC101927793 TRAPPC2L APRT GALNS LOC107987238 LOC105371409 PIEZO1 SLC22A31 LOC400558
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	CDH15 LINC00304 PABPN1L CDT1 LOC100129697 CBFA2T3 ACSF3 LOC101927793 TRAPPC2L APRT GALNS LOC107987238 LOC105371409 SLC22A31 LOC400558
nsv573723	Chr.16:89091139 - 89174375 on Build GRCh38	Gain	CDH15 ACSF3 LINC00304 LOC400558
nsv573720	Chr.16:88968841 - 89184474 on Build GRCh38	Gain	CDH15 ACSF3 LINC00304 CBFA2T3 LOC400558
nsv573724	Chr.16:89100686 - 89217401 on Build GRCh38	Loss	ZNF778 CDH15 ACSF3 LINC00304 SLC22A31 LOC400558
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	ZNF778 CDH15 LINC00304 PABPN1L CDT1 LOC100129697 CBFA2T3 LOC105371414 LOC100289580 ACSF3 LOC339059 LOC101927793 LOC100287036 TRAPPC2L APRT GALNS LOC107987238 LOC105371409 ANKRD11 PIEZO1 SLC22A31 LOC400558
dgv3066n100	Chr.16:89067685 - 89301626 on Build GRCh38	Gain	ZNF778 CDH15 ACSF3 LINC00304 LOC105371414 ANKRD11 SLC22A31 LOC400558
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	CDH15 LINC00304 PABPN1L CDT1 LOC100129697 CBFA2T3 ACSF3 LOC101927793 TRAPPC2L APRT GALNS LOC107987238 LOC105371409 LOC400558
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	SPIRE2 LINC00304 VPS9D1-AS1 CENPBD1 SNAI3 MIR4722 AFG3L1P FANCA LOC101927793 GAS8 TRAPPC2L PRDM7 TUBB3 LOC107987238 LOC105371409 FAM157C CTU2 IL17C CDH15 RPL13 CDT1 CHMP1A LOC107984817 ZNF276 LOC339059 APRT GALNS GAS8-AS1 SPG7 PIEZO1 RNF166 ZNF778 VPS9D1 SNAI3-AS1 SPATA33 PABPN1L LOC100129697 CPNE7 SPATA2L LOC105371419 TUBB8P7 ACSF3 DEF8 LOC100287036 LOC101927817 MVD SLC22A31 LOC400558 DBNDD1 MC1R CBFA2T3 LOC105371414 TCF25 LOC100289580 CDK10 SNORD68 CYBA URAHP ANKRD11 DPEP1
dgv5320n54	Chr.16:89114475 - 89197443 on Build GRCh38	Loss	CDH15 ACSF3 LINC00304 SLC22A31 LOC400558
nsv509638	Chr.16:89152681 - 89296203 on Build GRCh38	Insertion	ZNF778 CDH15 ACSF3 LINC00304 LOC105371414 ANKRD11 SLC22A31 LOC400558
nsv573727	Chr.16:89169527 - 89193067 on Build GRCh38	Loss	CDH15

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
adherens junction organization
positive regulation of muscle cell differentiation

Function(s)

calcium ion binding
protein binding