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See other CDH15 CNV Assays ›
Gene Symbol
CDH15
Assay Reference Genome
Location

Chr.16:89172807 on build GRCh38
Cytoband
16q24.3
Assay ID Hs05451378_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 1013

Gene Name:

 cadherin 15

Gene Aliases:

 CDH14, CDH3, CDHM, MCAD, MRD3

Location:

 Chr.16:89171755-89195492 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CDH15 NM_004933.2 NP_004924.1
AK308596.1
AK308631.1
BC008951.2 AAH08951.1
D83542.1 BAA12012.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv952072 Chr.16:89032193 - 89201992 on Build GRCh38 Deletion SLC22A31 ACSF3 CDH15 LOC400558 LINC00304
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain SLC22A31 ACSF3 LOC339059 GALNS LOC100129697 ZNF778 TRAPPC2L LINC00304 LOC107987238 PABPN1L CTU2 LOC105371409 CDH15 LOC100289580 LOC400558 APRT MIR4722 CBFA2T3 LOC101927793 PIEZO1 CDT1
nsv573723 Chr.16:89091139 - 89174375 on Build GRCh38 Gain ACSF3 CDH15 LOC400558 LINC00304
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss SLC22A31 ACSF3 GALNS LOC100129697 TRAPPC2L LINC00304 LOC107987238 PABPN1L LOC105371409 CDH15 LOC400558 APRT CBFA2T3 LOC101927793 CDT1
nsv573720 Chr.16:88968841 - 89184474 on Build GRCh38 Gain ACSF3 CDH15 LOC400558 LINC00304 CBFA2T3
nsv573724 Chr.16:89100686 - 89217401 on Build GRCh38 Loss SLC22A31 ACSF3 CDH15 LOC400558 ZNF778 LINC00304
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain SLC22A31 ACSF3 LOC339059 GALNS LOC100129697 ZNF778 TRAPPC2L LOC100287036 LINC00304 LOC107987238 PABPN1L LOC105371414 ANKRD11 LOC105371409 CDH15 LOC100289580 LOC400558 APRT CBFA2T3 LOC101927793 PIEZO1 CDT1
dgv3066n100 Chr.16:89067685 - 89301626 on Build GRCh38 Gain SLC22A31 ACSF3 CDH15 LOC400558 ZNF778 LINC00304 LOC105371414 ANKRD11
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss ACSF3 GALNS LOC100129697 TRAPPC2L LINC00304 LOC107987238 PABPN1L LOC105371409 CDH15 LOC400558 APRT CBFA2T3 LOC101927793 CDT1
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss CPNE7 LOC105371419 TRAPPC2L SNORD68 LINC00304 PRDM7 TUBB8P7 FAM157C LOC105371409 RNF166 CDK10 APRT MIR4722 MVD CBFA2T3 TCF25 SLC22A31 ACSF3 LOC100129697 LOC100287036 LOC107987238 PABPN1L AFG3L1P SNAI3 LOC100289580 LOC400558 CENPBD1 LOC339059 CYBA URAHP ZNF778 DEF8 CTU2 DBNDD1 RPL13 SPATA33 ZNF276 DPEP1 LOC101927793 CDT1 LOC107984817 GALNS IL17C CHMP1A VPS9D1-AS1 SNAI3-AS1 MC1R LOC105371414 ANKRD11 FANCA SPIRE2 VPS9D1 GAS8-AS1 LOC101927817 TUBB3 CDH15 GAS8 SPG7 SPATA2L PIEZO1
dgv5320n54 Chr.16:89114475 - 89197443 on Build GRCh38 Loss SLC22A31 ACSF3 CDH15 LOC400558 LINC00304
nsv509638 Chr.16:89152681 - 89296203 on Build GRCh38 Insertion SLC22A31 ACSF3 CDH15 LOC400558 ZNF778 LINC00304 LOC105371414 ANKRD11
nsv573727 Chr.16:89169527 - 89193067 on Build GRCh38 Loss CDH15

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More Information


Additional Information:

For this assay, SNP(s) [rs113693994] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Function(s) Process(es)


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