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See other ATP2A1 CNV Assays ›
Gene Symbol
ATP2A1
Assay Reference Genome
Location

Chr.16:28889740 on build GRCh38
Cytoband
16p11.2
Assay ID Hs05470121_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 487

Gene Name:

 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1

Gene Aliases:

 ATP2A, SERCA1

Location:

 Chr.16:28878488-28904509 on Build GRCh38

Assay Gene Location:

 Within Intron 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATP2A1 NM_001286075.1 NP_001273004.1
NM_004320.4 NP_004311.1
NM_173201.3 NP_775293.1
AK128456.1
AK291314.1
BC037354.1 AAH37354.1
BX537389.1 CAD97631.1
BX537784.1 CAD97841.1
BX647365.1
BX647366.1
BX647367.1
BX647368.1
BX648544.1
BX649072.1
EF139859.1
EF139860.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4987n54 Chr.16:28824884 - 29032129 on Build GRCh38 Gain ATXN2L LAT TUFM ATP2A1-AS1 SPNS1 ATP2A1 NFATC2IP RABEP2 MIR4721 SH2B1 MIR4517 CD19
esv3892826 Chr.16:28814728 - 29032129 on Build GRCh38 Gain+Loss ATXN2L LAT TUFM ATP2A1-AS1 SPNS1 ATP2A1 NFATC2IP RABEP2 MIR4721 SH2B1 MIR4517 CD19
esv3638349 Chr.16:28860611 - 28907894 on Build GRCh38 Gain ATP2A1-AS1 ATP2A1 RABEP2 SH2B1
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss NPIPB6 NPIPB8 SGF29 MIR6862-2 MIR4721 CLN3 IL27 NUPR1 ATP2A1-AS1 RRN3P2 XPO6 NPIP EIF3CL SBK1 MIR6862-1 LAT LOC101928215 RABEP2 CD19 EIF3C SULT1A1 ATXN2L SULT1A2 TUFM SPNS1 NPIPB9 ATP2A1 NFATC2IP SH2B1 MIR4517 APOBR
nsv518648 Chr.16:28826194 - 29032129 on Build GRCh38 Loss ATXN2L LAT TUFM ATP2A1-AS1 SPNS1 ATP2A1 NFATC2IP RABEP2 MIR4721 SH2B1 MIR4517 CD19
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain NPIPB8 SGF29 MIR6862-2 MIR4721 CLN3 IL27 NUPR1 ATP2A1-AS1 RRN3P2 NPIP EIF3CL MIR6862-1 LAT LOC101928215 RABEP2 CD19 LOC107984832 EIF3C SULT1A1 ATXN2L SULT1A2 TUFM SPNS1 NPIPB9 ATP2A1 NFATC2IP SH2B1 MIR4517 APOBR
dgv2831n100 Chr.16:28812594 - 29032542 on Build GRCh38 Gain ATXN2L LAT TUFM ATP2A1-AS1 SPNS1 ATP2A1 NFATC2IP RABEP2 MIR4721 SH2B1 MIR4517 CD19
esv3570454 Chr.16:28799004 - 29032129 on Build GRCh38 Gain ATXN2L LAT TUFM ATP2A1-AS1 SPNS1 ATP2A1 NFATC2IP RABEP2 MIR4721 SH2B1 MIR4517 CD19
nsv571805 Chr.16:28824174 - 29032129 on Build GRCh38 Loss ATXN2L LAT TUFM ATP2A1-AS1 SPNS1 ATP2A1 NFATC2IP RABEP2 MIR4721 SH2B1 MIR4517 CD19
dgv2830n100 Chr.16:28620264 - 29032542 on Build GRCh38 Gain LAT NPIPB8 MIR6862-2 RABEP2 MIR4721 CD19 EIF3C SULT1A1 ATXN2L TUFM ATP2A1-AS1 SPNS1 NPIPB9 ATP2A1 NFATC2IP SH2B1 MIR4517

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