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See other SLC6A1 CNV Assays ›
Gene Symbol
SLC6A1
Assay Reference Genome
Location

Chr.3:11017685 on build GRCh38
Cytoband
3p25.3
Assay ID Hs05886358_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 6529

Gene Name:

 solute carrier family 6 member 1

Gene Aliases:

 GABATHG, GABATR, GAT1, MAE

Location:

 Chr.3:10992718-11039249 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC6A1 NM_003042.3 NP_003033.3
XM_005265410.4 XP_005265467.1
XM_005265411.4 XP_005265468.1
XM_006713306.3 XP_006713369.1
XM_011534025.2 XP_011532327.1
XM_011534027.2 XP_011532329.1
XM_017007071.1 XP_016862560.1
XM_017007072.1 XP_016862561.1
AK295702.1
BC033904.1 AAH33904.1
X54673.1 CAA38484.1

Target Gene Details

Entrez Gene ID:

 100874090

Gene Name:

 SLC6A1 antisense RNA 1

Gene Aliases:

 -

Location:

 Chr.3:11006098-11019224 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC6A1-AS1 NR_046647.1
DA771774.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv436362 Chr.3:10048344 - 11860564 on Build GRCh38 Deletion SLC6A1 LINC00852 SLC6A11 ATP2B2 VHL ATG7 LINC00606 HRH1 BRK1 TATDN2 SLC6A1-AS1 FANCD2OS LOC101927467 GHRL TAMM41 MIR378B GHRLOS ATP2B2-IT2 MIR885 IRAK2 FANCD2 SEC13 VGLL4
nsv508209 Chr.3:11015092 - 11076380 on Build GRCh38 Deletion LOC101927467 SLC6A1 SLC6A1-AS1
dgv762e201 Chr.3:10008967 - 11913136 on Build GRCh38 Deletion LINC00852 ATG7 LINC00606 TATDN2 SLC6A1-AS1 FANCD2OS LOC101927467 GHRL TAMM41 MIR378B LOC401052 ATP2B2-IT2 EMC3 FANCD2P2 IRAK2 SLC6A1 SLC6A11 ATP2B2 VHL HRH1 CIDECP BRK1 GHRLOS MIR885 FANCD2 SEC13 VGLL4
nsv1121603 Chr.3:10071433 - 11889279 on Build GRCh38 Deletion SLC6A1 LINC00852 SLC6A11 ATP2B2 VHL ATG7 LINC00606 HRH1 BRK1 TATDN2 SLC6A1-AS1 FANCD2OS LOC101927467 GHRL TAMM41 MIR378B GHRLOS ATP2B2-IT2 MIR885 FANCD2P2 IRAK2 FANCD2 SEC13 VGLL4
nsv436869 Chr.3:10064456 - 11877985 on Build GRCh38 Insertion SLC6A1 LINC00852 SLC6A11 ATP2B2 VHL ATG7 LINC00606 HRH1 BRK1 TATDN2 SLC6A1-AS1 FANCD2OS LOC101927467 GHRL TAMM41 MIR378B GHRLOS ATP2B2-IT2 MIR885 FANCD2P2 IRAK2 FANCD2 SEC13 VGLL4
nsv1073204 Chr.3:9996548 - 11875005 on Build GRCh38 Deletion LINC00852 ATG7 LINC00606 TATDN2 SLC6A1-AS1 FANCD2OS LOC101927467 GHRL TAMM41 MIR378B LOC401052 ATP2B2-IT2 EMC3 FANCD2P2 IRAK2 SLC6A1 SLC6A11 ATP2B2 VHL HRH1 CIDECP BRK1 GHRLOS MIR885 FANCD2 SEC13 EMC3-AS1 VGLL4

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