Hs05899465_cn

• Gene Symbol: SLC41A3
• Assay Reference Genome Location: Chr.3:126013907 on build GRCh38
• Cytoband: 3q21.2

Target Gene Details

• Entrez Gene ID: 54946
• Gene Name: solute carrier family 41 member 3
• Gene Aliases: SLC41A1-L2
• Location: Chr.3:126006357-126101550 on Build GRCh38
• Assay Gene Location: Within Intron 12

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SLC41A3	NM_001008485.1			NP_001008485.1
	NM_001008486.1			NP_001008486.1
	NM_001008487.1			NP_001008487.1
	NM_001164475.1			NP_001157947.1
	NM_017836.3			NP_060306.3
	XM_005247559.1			XP_005247616.1
	XM_005247562.1			XP_005247619.1
	XM_005247563.2			XP_005247620.1
	XM_005247564.1			XP_005247621.1
	XM_005247565.2			XP_005247622.1
	XM_006713681.2			XP_006713744.1
	XM_011512945.1			XP_011511247.1
	XM_017006705.1			XP_016862194.1
	XM_017006706.1			XP_016862195.1
	XM_017006707.1			XP_016862196.1
	XM_017006708.1			XP_016862197.1
	XM_017006709.1			XP_016862198.1
	AK000480.1			BAA91192.1
	AK021925.1			BAB13938.1
	AK022780.1			BAB14241.1
	AK091671.1			BAC03717.1
	AK093380.1
	AK094051.1
	AK128054.1
	AK298070.1
	AW938624.1
	BC009039.2			AAH09039.1
	BC028241.1			AAH28241.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1009333	Chr.3:126006809 - 126041785 on Build GRCh38	Loss	SLC41A3
nsv591465	Chr.3:125283331 - 126140524 on Build GRCh38	Gain	LOC105374312 LOC101927056 SLC41A3 ALDH1L1 SNX4 ZNF148 MIR548I1 OSBPL11 FAM86JP ROPN1B ALG1L ALDH1L1-AS1
nsv829716	Chr.3:125928159 - 126116976 on Build GRCh38	Gain+Loss	SLC41A3 ALDH1L1 FAM86JP ROPN1B ALG1L ALDH1L1-AS1
nsv1011457	Chr.3:125287676 - 126146923 on Build GRCh38	Gain	LOC105374312 LOC101927056 SLC41A3 ALDH1L1 SNX4 ZNF148 MIR548I1 OSBPL11 FAM86JP ROPN1B ALG1L ALDH1L1-AS1

More Information

Additional Information:

For this assay, SNP(s) [rs76132619] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

secondary carrier transporter

Gene Ontology Categories:

Process(es)

transmembrane transport
cation transmembrane transport

Function(s)

protein binding
cation transmembrane transporter activity