Hs05930659_cn

• Gene Symbol: SLC2A9
• Assay Reference Genome Location: Chr.4:9815098 on build GRCh38
• Cytoband: 4p16.1

Target Gene Details

• Entrez Gene ID: 56606
• Gene Name: solute carrier family 2 member 9
• Gene Aliases: GLUT9, GLUTX, UAQTL2, URATv1
• Location: Chr.4:9771125-10040248 on Build GRCh38
• Assay Gene Location: Within Intron 21

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SLC2A9	XM_006713968.3			XP_006714031.1
	XM_011513856.2			XP_011512158.1
	XM_011513857.1			XP_011512159.1
	XM_011513858.1			XP_011512160.1
	XM_011513859.2			XP_011512161.1
	XM_011513860.2			XP_011512162.1
	XM_011513861.2			XP_011512163.1
	XM_011513862.2			XP_011512164.1
	XM_011513863.2			XP_011512165.1
	XM_011513864.2			XP_011512166.1
	XM_011513867.2			XP_011512169.1
	XM_017008457.1			XP_016863946.1
	XM_017008458.1			XP_016863947.1
	XM_017008459.1			XP_016863948.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759222	Chr.4:8520446 - 10274843 on Build GRCh38	Gain+Loss	USP17L18 CPZ USP17L26 SLC2A9 HMX1 USP17L20 USP17L29 USP17L22 WDR1 MIR3138 USP17L11 OR7E35P LOC101928532 OR7E85P MIR548I2 USP17L13 DRD5 USP17L28 USP17L30 USP17L21 USP17L17 FAM86KP USP17L12 USP17L19 USP17L5 DEFB131 GPR78 USP17L25 USP17L9P USP17L15 USP17L6P USP17L10 USP17L24 USP17L27 LOC650293 LOC100133128
esv3599593	Chr.4:9722281 - 9836957 on Build GRCh38	Gain	DRD5 SLC2A9 OR7E35P
esv3599589	Chr.4:9651137 - 10489676 on Build GRCh38	Gain	DRD5 SLC2A9 WDR1 MIR3138 OR7E35P ZNF518B
dgv5108n100	Chr.4:9427573 - 9828584 on Build GRCh38	Gain	DEFB131 MIR548I2 DRD5 SLC2A9 OR7E35P OR7E85P
nsv1005698	Chr.4:8434559 - 10248775 on Build GRCh38	Gain	USP17L18 CPZ USP17L26 SLC2A9 HMX1 ACOX3 USP17L20 USP17L29 USP17L22 WDR1 MIR3138 USP17L11 OR7E35P LOC101928532 TRMT44 OR7E85P MIR548I2 USP17L13 DRD5 USP17L28 USP17L30 USP17L21 USP17L17 FAM86KP USP17L12 USP17L19 USP17L5 DEFB131 GPR78 USP17L25 USP17L9P USP17L15 USP17L6P USP17L10 USP17L24 USP17L27 LOC650293 LOC100133128
dgv5118n100	Chr.4:9800522 - 9976790 on Build GRCh38	Gain	SLC2A9
dgv5119n100	Chr.4:9804044 - 9895896 on Build GRCh38	Loss	SLC2A9
dgv5117n100	Chr.4:9711988 - 10222212 on Build GRCh38	Gain	DRD5 SLC2A9 WDR1 MIR3138 OR7E35P
nsv1014335	Chr.4:9435268 - 10687720 on Build GRCh38	Gain	DEFB131 MIR548I2 DRD5 CLNK SLC2A9 WDR1 MIR3138 OR7E35P ZNF518B OR7E85P

More Information

Additional Information:

For this assay, SNP(s) [rs80224261] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

glucose transport
proton transport
urate metabolic process
organic acid transmembrane transport
glucose transmembrane transport

Function(s)

sugar:proton symporter activity
glucose transmembrane transporter activity
urate transmembrane transporter activity
transmembrane transporter activity