Hs05977992_cn

• Gene Symbol: BASP1
• Assay Reference Genome Location: Chr.5:17224856 on build GRCh38
• Cytoband: 5p15.1

Target Gene Details

• Entrez Gene ID: 10409
• Gene Name: brain abundant membrane attached signal protein 1
• Gene Aliases: CAP-23, CAP23, NAP-22, NAP22
• Location: Chr.5:17216823-17276845 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
BASP1	NM_001271606.1			NP_001258535.1
	NM_006317.4			NP_006308.3
	AF039656.1			AAC67374.1
	AK295995.1
	AK314152.1
	BC000518.2			AAH00518.1
	BG704783.1
	CN355202.1
	DW458407.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv597312	Chr.5:17214792 - 17225224 on Build GRCh38	Loss	LOC285696 BASP1
nsv830218	Chr.5:17093053 - 17289936 on Build GRCh38	Loss	LOC285696 BASP1
nsv521697	Chr.5:17211540 - 17225224 on Build GRCh38	Loss	LOC285696 BASP1

More Information

Additional Information:

For this assay, SNP(s) [rs75911942] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

thorax and anterior abdomen determination
gonad development
substantia nigra development
negative regulation of transcription, DNA-templated
mesenchymal to epithelial transition
positive regulation of heart growth
diaphragm development
metanephric mesenchyme development
glomerular visceral epithelial cell differentiation
positive regulation of metanephric ureteric bud development

Function(s)

transcription corepressor activity
protein binding
protein domain specific binding
transcription regulatory region DNA binding