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See other GCNT2 CNV Assays ›
Gene Symbol
GCNT2
Assay Reference Genome
Location

Chr.6:10531235 on build GRCh38
Cytoband
6p24.3
Assay ID Hs06155001_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 2651

Gene Name:

 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)

Gene Aliases:

 CCAT, CTRCT13, GCNT2C, GCNT5, IGNT, II, NACGT1, NAGCT1, ULG3, bA360O19.2, bA421M1.1

Location:

 Chr.6:10521283-10629368 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GCNT2 NM_145649.4 NP_663624.1
XM_005248999.2 XP_005249056.1
XM_006715052.3 XP_006715115.1
AB078432.1 BAC66781.1
AF458024.1 AAM73864.1
AK090483.1 BAC03464.1
AK098105.1 BAC05234.1
AK291767.1
AK307329.1
AK307337.1
AK307373.1
AL832714.1
AY435145.1 AAR95646.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv966670 Chr.6:10447438 - 10871656 on Build GRCh38 Duplication GCNT2 TMEM14C PAK1IP1 MAK TMEM14B MIR5689HG LOC101928106 C6orf52
nsv5195 Chr.6:10515337 - 10549754 on Build GRCh38 Insertion GCNT2
nsv1022072 Chr.6:10374492 - 10581628 on Build GRCh38 Gain GCNT2 TFAP2A LINC00518 MIR5689HG LOC101928106 MIR5689 TFAP2A-AS1
dgv10300n54 Chr.6:10467462 - 10531953 on Build GRCh38 Loss GCNT2 LOC101928106
dgv373n21 Chr.6:10469593 - 10542543 on Build GRCh38 Loss GCNT2 LOC101928106
esv2762578 Chr.6:10521813 - 10542877 on Build GRCh38 Loss GCNT2
dgv5917n100 Chr.6:10465938 - 10535418 on Build GRCh38 Loss GCNT2 LOC101928106
esv34437 Chr.6:10456877 - 10540980 on Build GRCh38 Loss GCNT2 LOC101928106
esv2759406 Chr.6:10443564 - 10642899 on Build GRCh38 Loss GCNT2 MIR5689HG LOC101928106
dgv1165e214 Chr.6:10521953 - 10553306 on Build GRCh38 Loss GCNT2
esv3570769 Chr.6:10495003 - 10581182 on Build GRCh38 Loss GCNT2
esv3567263 Chr.6:10467735 - 10531767 on Build GRCh38 Deletion GCNT2 LOC101928106
nsv1030024 Chr.6:10516796 - 10567176 on Build GRCh38 Loss GCNT2
nsv600988 Chr.6:10501021 - 10614845 on Build GRCh38 Loss GCNT2
esv3890790 Chr.6:10513722 - 10531953 on Build GRCh38 Loss GCNT2
nsv462631 Chr.6:10449025 - 10839526 on Build GRCh38 Gain GCNT2 TMEM14C PAK1IP1 MAK TMEM14B MIR5689HG LOC101928106 C6orf52
dgv5918n100 Chr.6:10484627 - 10559867 on Build GRCh38 Loss GCNT2
esv2667708 Chr.6:10213898 - 10574813 on Build GRCh38 Deletion GCNT2 TFAP2A LINC00518 MIR5689HG LOC101928106 MIR5689 TFAP2A-AS1
esv3608074 Chr.6:10520017 - 10533330 on Build GRCh38 Loss GCNT2
nsv10801 Chr.6:10466007 - 10531236 on Build GRCh38 Loss GCNT2 LOC101928106
esv2763942 Chr.6:10466868 - 10535430 on Build GRCh38 Loss GCNT2 LOC101928106

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