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See other TRIM39 CNV Assays ›
Gene Symbol
TRIM39
Assay Reference Genome
Location

Chr.6:30332501 on build GRCh38
Cytoband
6p22.1
Assay ID Hs06155087_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 56658

Gene Name:

 tripartite motif containing 39

Gene Aliases:

 RNF23, TFP, TRIM39B

Location:

 Chr.6:30326844-30343729 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39 NM_021253.3 NP_067076.2
NM_172016.2 NP_742013.1
AB046381.1 BAB16374.1
AK292512.1
AX776007.1 CAE11703.1
BC007661.2 AAH07661.1
BC034985.1 AAH34985.1
BT007370.1 AAP36034.1

Target Gene Details

Entrez Gene ID:

 202658

Gene Name:

 TRIM39-RPP21 readthrough

Gene Aliases:

 TRIM39R

Location:

 Chr.6:30329311-30346858 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39-RPP21 NM_001199119.1 NP_001186048.1
AI805914.1
EU012025.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion MICA VARS2 FLOT1 OR12D2 PPP1R10 HCG17 MDC1 LINC00243 HCG22 ABCF1 OR2H2 CDSN MIR6891 LOC101929006 MAS1L LOC554223 GABBR1 C6orf15 TRIM39-RPP21 PSORS1C1 RPP21 MIR4640 HLA-J GNL1 HLA-E TRIM31 PPP1R11 DPCR1 OR14J1 TRIM39 IFITM4P PPP1R18 NRM ZNRD1 OR2H1 DHX16 MUC22 OR12D3 SFTA2 OR2J2 MDC1-AS1 CCHCR1 HLA-B HLA-G HCG4 PSORS1C2 OR11A1 TRIM40 HCG18 GTF2H4 ZNRD1ASP ZFP57 HLA-H MRPS18B MOG SNORD32B TRIM10 HLA-L TRIM31-AS1 TRIM15 ATAT1 C6orf136 OR5V1 PSORS1C3 MUC21 UBD LINC01015 MIR877 HCG8 PRR3 DDR1 HLA-F TUBB HLA-K HCG27 IER3 TCF19 HCG20 HLA-A TRIM26 OR10C1 HLA-F-AS1 POU5F1 LOC105375014 HLA-C RNF39 HCG9 HCG4B
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion VARS2 FLOT1 TRIM27 OR12D2 PPP1R10 HCG17 MDC1 LINC00243 HCG22 ABCF1 OR2H2 CDSN HCG16 LOC101929006 MAS1L LOC554223 GABBR1 C6orf15 TRIM39-RPP21 PSORS1C1 RPP21 MIR4640 HLA-J GNL1 LINC01556 OR2W1 HLA-E ZNF311 TRIM31 PPP1R11 DPCR1 OR14J1 TRIM39 IFITM4P PPP1R18 NRM ZNRD1 OR2H1 DHX16 MUC22 OR12D3 SFTA2 OR2J2 MDC1-AS1 CCHCR1 HLA-G HCG4 PSORS1C2 OR11A1 TRIM40 HCG18 GTF2H4 OR2B3 ZNRD1ASP ZFP57 HLA-H MRPS18B MOG SNORD32B TRIM10 HLA-L OR2J3 TRIM31-AS1 TRIM15 ATAT1 C6orf136 OR5V1 PSORS1C3 MUC21 UBD HCG14 LINC01015 MIR877 HCG8 LOC100129636 PRR3 DDR1 HLA-F TUBB HLA-K HCG27 IER3 TCF19 HCG20 HLA-A TRIM26 OR10C1 HLA-F-AS1 POU5F1 LINC00533 LOC105375014 RNF39 HCG9 LINC01623 HCG4B
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion VARS2 FLOT1 PPP1R10 HCG17 MDC1 LINC00243 HCG22 ABCF1 CDSN LOC554223 C6orf15 TRIM39-RPP21 PSORS1C1 RPP21 MIR4640 HLA-J GNL1 HLA-E TRIM31 PPP1R11 DPCR1 TRIM39 IFITM4P PPP1R18 NRM ZNRD1 DHX16 MUC22 SFTA2 MDC1-AS1 CCHCR1 HLA-G HCG4 PSORS1C2 TRIM40 HCG18 GTF2H4 ZNRD1ASP HLA-H MRPS18B TRIM10 HLA-L TRIM31-AS1 TRIM15 ATAT1 C6orf136 PSORS1C3 MUC21 MIR877 HCG8 PRR3 DDR1 HLA-F TUBB HLA-K HCG27 IER3 TCF19 HCG20 HLA-A TRIM26 HLA-F-AS1 POU5F1 LOC105375014 HLA-C RNF39 HCG9 HCG4B
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss VARS2 FLOT1 PPP1R10 HCG17 MDC1 LINC00243 HCG22 ABCF1 CDSN C6orf15 TRIM39-RPP21 PSORS1C1 RPP21 MIR4640 HLA-J GNL1 HLA-E TRIM31 PPP1R11 DPCR1 TRIM39 PPP1R18 NRM ZNRD1 DHX16 MUC22 SFTA2 MDC1-AS1 CCHCR1 PSORS1C2 TRIM40 HCG18 GTF2H4 ZNRD1ASP HLA-H MRPS18B TRIM10 HLA-L TRIM31-AS1 TRIM15 ATAT1 C6orf136 PSORS1C3 MUC21 MIR877 HCG8 PRR3 DDR1 TUBB HLA-K HCG27 IER3 TCF19 HCG20 HLA-A TRIM26 POU5F1 LOC105375014 HLA-C RNF39 HCG9 HCG4B
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication MICA VARS2 FLOT1 PPP1R10 HCG17 MDC1 LINC00243 HCG22 ABCF1 CDSN MIR6891 C6orf15 TRIM39-RPP21 PSORS1C1 RPP21 MIR4640 HLA-J GNL1 HLA-E TRIM31 PPP1R11 DPCR1 TRIM39 PPP1R18 NRM ZNRD1 DHX16 MUC22 SFTA2 MDC1-AS1 CCHCR1 HLA-B PSORS1C2 TRIM40 HCG18 GTF2H4 ZNRD1ASP MRPS18B TRIM10 HLA-L TRIM31-AS1 TRIM15 ATAT1 C6orf136 PSORS1C3 MUC21 MIR877 HCG8 PRR3 DDR1 TUBB HCG27 IER3 TCF19 HCG20 TRIM26 HCG26 POU5F1 HCP5 LOC105375014 HLA-C RNF39 LOC102725068

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