Hs06310030_cn

• Gene Symbol: CHORDC1
• Assay Reference Genome Location: Chr.11:90218289 on build GRCh38
• Cytoband: 11q14.3

Target Gene Details

• Entrez Gene ID: 26973
• Gene Name: cysteine and histidine rich domain containing 1
• Gene Aliases: CHP1
• Location: Chr.11:90200429-90223364 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CHORDC1	NM_001144073.1			NP_001137545.1
	NM_012124.2			NP_036256.2
	XM_017017540.1			XP_016873029.1
	XM_017017541.1			XP_016873030.1
	AF123249.1			AAG43237.1
	AF192466.1			AAF18437.1
	AK225365.1
	AK225565.1
	AK226099.1
	AK290231.1
	AK312663.1
	BC072461.1			AAH72461.1
	DA417105.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv555833	Chr.11:90162772 - 90275439 on Build GRCh38	Loss	DISC1FP1 NAALAD2 CHORDC1
esv3579841	Chr.11:90080153 - 90413922 on Build GRCh38	Loss	DISC1FP1 UBTFL1 NAALAD2 CHORDC1
esv3579993	Chr.11:89580840 - 90609205 on Build GRCh38	Gain	NOX4 LOC642579 TRIM49 TRIM64 LOC642414 MIR4490 TRIM64DP DISC1FP1 UBTFL1 LOC105378955 TRIM64B NAALAD2 TRIM64EP TRIM51EP TRIM77 TRIM49C LOC105369176 TRIM53AP TRIM49D2 TRIM49D1 FOLH1B CHORDC1
nsv1035213	Chr.11:90152198 - 90257741 on Build GRCh38	Gain	DISC1FP1 NAALAD2 CHORDC1
nsv1048624	Chr.11:90100568 - 91604298 on Build GRCh38	Loss	MIR4490 MIR1261 DISC1FP1 NAALAD2 CHORDC1
nsv468787	Chr.11:90168986 - 90220213 on Build GRCh38	Loss	NAALAD2 CHORDC1
nsv1048042	Chr.11:90191353 - 90229342 on Build GRCh38	Loss	NAALAD2 CHORDC1
nsv555832	Chr.11:90142496 - 90309371 on Build GRCh38	Gain	DISC1FP1 NAALAD2 CHORDC1

More Information

Additional Information:

For this assay, SNP(s) [rs77975598] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Process(es)

regulation of centrosome duplication
chaperone-mediated protein folding
regulation of cellular response to heat
negative regulation of Rho-dependent protein serine/threonine kinase activity

Function(s)

protein binding
ATP binding
zinc ion binding
ADP binding
Hsp90 protein binding