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System Message

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Gene Symbol: PPFIBP1
Assay Reference Genome Location: Chr.12:27551926 on build GRCh38
Cytoband: 12p11.23

Assay ID

Hs06359443_cn

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Availability	Made To Order
Catalog #	4400291
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Genomic Map
Assay Details
More Information

Assay Details

Target Gene Details

Entrez Gene ID:	8496
Gene Name:	PPFIA binding protein 1
Gene Aliases:	L2, SGT2, hSGT2, hSgt2p
Location:	Chr.12:27524112-27695564 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PPFIBP1	NM_001198915.1			NP_001185844.1
	NM_001198916.1			NP_001185845.1
	NM_003622.3			NP_003613.3
	NM_177444.2			NP_803193.2
	XM_006719159.3			XP_006719222.1
	XM_017020056.1			XP_016875545.1
	XM_017020059.1			XP_016875548.1
	XM_017020061.1			XP_016875550.1
	XM_017020062.1			XP_016875551.1
	XM_017020063.1			XP_016875552.1
	XM_017020064.1			XP_016875553.1
	XM_017020065.1			XP_016875554.1
	XM_017020066.1			XP_016875555.1
	XM_017020067.1			XP_016875556.1
	XM_017020068.1			XP_016875557.1
	XM_017020069.1			XP_016875558.1
	XM_017020070.1			XP_016875559.1
	XM_017020071.1			XP_016875560.1
	XM_017020072.1			XP_016875561.1
	XM_017020073.1			XP_016875562.1
	XM_017020074.1			XP_016875563.1
	XM_017020075.1			XP_016875564.1
	XM_017020078.1			XP_016875567.1
	AB033056.2
	AB049149.1			BAB39690.1
	AF034802.1			AAC26103.1
	AK294267.1
	AK314350.1
	BC022873.1
	BC046159.1			AAH46159.1
	BC050281.1			AAH50281.1
	BM272389.1
	BQ777042.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1406n100	Chr.12:27128236 - 27640822 on Build GRCh38	Gain	STK38L ARNTL2 SMCO2 PPFIBP1 ARNTL2-AS1
esv3892167	Chr.12:27548131 - 27634686 on Build GRCh38	Gain	PPFIBP1
dgv2417n54	Chr.12:27068022 - 27638988 on Build GRCh38	Gain	STK38L ARNTL2 C12orf71 SMCO2 PPFIBP1 ARNTL2-AS1
nsv832358	Chr.12:27519016 - 27705439 on Build GRCh38	Gain	PPFIBP1 REP15
nsv436825	Chr.12:27135971 - 27642579 on Build GRCh38	Insertion	STK38L ARNTL2 SMCO2 PPFIBP1 ARNTL2-AS1
esv2745664	Chr.12:27017516 - 27820117 on Build GRCh38	Deletion	STK38L MED21 ARNTL2 C12orf71 SMCO2 PPFIBP1 REP15 ARNTL2-AS1 MANSC4 MRPS35 KLHL42
esv3628940	Chr.12:27451350 - 27631744 on Build GRCh38	Gain	SMCO2 PPFIBP1
nsv520981	Chr.12:27546387 - 27556982 on Build GRCh38	Loss	PPFIBP1
nsv521872	Chr.12:27114021 - 27635541 on Build GRCh38	Gain	STK38L ARNTL2 SMCO2 PPFIBP1 ARNTL2-AS1
dgv271e199	Chr.12:27089700 - 27631451 on Build GRCh38	Deletion	STK38L ARNTL2 SMCO2 PPFIBP1 ARNTL2-AS1

More Information

Set Membership:

Intragenic

Intronic

Non-exonic

DGV Variation

Gene Ontology Categories:

Function(s) Process(es)

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