Hs06431489_cn

• Gene Symbol: YBX2
• Assay Reference Genome Location: Chr.17:7291455 on build GRCh38
• Cytoband: 17p13.1

Target Gene Details

• Entrez Gene ID: 51087
• Gene Name: Y-box binding protein 2
• Gene Aliases: CONTRIN, CSDA3, DBPC, MSY2
• Location: Chr.17:7288252-7294602 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
YBX2	NM_015982.3			NP_057066.2
	XM_017024713.1			XP_016880202.1
	AB208818.1	1	3135	BAD92055.1
	AF096834.1			AAD30662.1
	AK092747.1	3	771
	AK315035.1
	BC033800.1			AAH33800.1
	BC047760.1			AAH47760.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422288	Chr.17:6789933 - 7646709 on Build GRCh38	Deletion	SLC35G6 ALOX12 SAT2 MIR497HG RNASEK SNORA67 SHBG CTDNEP1 SENP3 GPS2 EIF5A PLSCR3 TEKT1 DLG4 ZBTB4 LOC107983988 SNORD10 MIR324 TNFSF12-TNFSF13 FBXO39 ELP5 FGF11 SLC16A13 CLEC10A SOX15 ASGR2 MIR195 LOC100996842 SPEM1 SLC2A4 PHF23 CHRNB1 ASGR1 C17orf74 TMEM95 C17orf49 CD68 GABARAP BCL6B EIF4A1 ALOX12P2 ACAP1 POLR2A ALOX12-AS1 TMEM256 MIR497 KCTD11 YBX2 NEURL4 CLDN7 NLGN2 FXR2 SENP3-EIF4A1 SLC16A11 DVL2 ATP1B2 TNFSF12 MPDU1 TNFSF13 ACADVL TMEM256-PLSCR3 TMEM102 TNK1 SNORA48 RNASEK-C17orf49
nsv952118	Chr.17:7174582 - 7456981 on Build GRCh38	Deletion	C17orf74 TMEM95 GABARAP ACAP1 TMEM256 KCTD11 CTDNEP1 GPS2 EIF5A YBX2 NEURL4 CLDN7 NLGN2 PLSCR3 DLG4 LOC107983988 DVL2 MIR324 ELP5 FGF11 ACADVL TMEM256-PLSCR3 TMEM102 TNK1 SPEM1 SLC2A4 PHF23 CHRNB1 ASGR1
esv2665200	Chr.17:7091816 - 7333062 on Build GRCh38	Deletion	DLG4 GABARAP DVL2 MIR324 ELP5 CTDNEP1 GPS2 EIF5A ACADVL YBX2 ASGR2 NEURL4 CLDN7 SLC2A4 PHF23 ASGR1
nsv574322	Chr.17:7010333 - 7689462 on Build GRCh38	Loss	SLC35G6 ALOX12 SAT2 MIR497HG RNASEK SNORA67 SHBG CTDNEP1 SENP3 GPS2 EIF5A PLSCR3 DLG4 ZBTB4 LOC107983988 SNORD10 MIR324 TNFSF12-TNFSF13 ELP5 FGF11 SLC16A13 CLEC10A SOX15 ASGR2 MIR195 LOC100996842 SPEM1 SLC2A4 PHF23 CHRNB1 ASGR1 C17orf74 TMEM95 C17orf49 CD68 GABARAP BCL6B EIF4A1 ACAP1 POLR2A ALOX12-AS1 TMEM256 MIR497 KCTD11 YBX2 NEURL4 CLDN7 NLGN2 FXR2 SENP3-EIF4A1 WRAP53 SLC16A11 DVL2 ATP1B2 TNFSF12 MPDU1 TNFSF13 ACADVL TMEM256-PLSCR3 TMEM102 TNK1 TP53 SNORA48 RNASEK-C17orf49
nsv1963	Chr.17:7244585 - 7333855 on Build GRCh38	Deletion	ELP5 CTDNEP1 GPS2 EIF5A YBX2 NEURL4 CLDN7 SLC2A4

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
spermatogenesis
translational attenuation
oocyte development

Function(s)

DNA binding
RNA binding