Hs06456127_cn

• Gene Symbol: CTDP1
• Assay Reference Genome Location: Chr.18:79686067 on build GRCh38
• Cytoband: 18q23

Target Gene Details

• Entrez Gene ID: 9150
• Gene Name: CTD phosphatase subunit 1
• Gene Aliases: CCFDN, FCP1
• Location: Chr.18:79679801-79754510 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CTDP1	NM_001202504.1			NP_001189433.1
	NM_001318511.1			NP_001305440.1
	NM_004715.4			NP_004706.3
	NM_048368.3			NP_430255.2
	XM_011526261.1			XP_011524563.1
	AF154115.1			AAD42088.1
	BC052576.1			AAH52576.1
	BC063447.1			AAH63447.1
	DB451780.1
	DR001939.1

Target Gene Details

• Entrez Gene ID: 105376875
• Gene Name: uncharacterized LOC105376875
• Gene Aliases: -
• Location: Chr.18:79680284-79688319 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105376875	XM_011526290.2	2	1979	XP_011524592.1
	XM_011526292.2	2	3753	XP_011524594.1
	XM_017026112.1	2	2277	XP_016881601.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509709	Chr.18:79685368 - 79838375 on Build GRCh38	Insertion	KCNG2 LOC105376875 CTDP1
nsv428359	Chr.18:79277548 - 80255221 on Build GRCh38	Gain	RBFA ADNP2 TXNL4A PARD6G-AS1 ATP9B RBFADN LOC284241 NFATC1 LOC284240 PQLC1 KCNG2 LOC105376875 LOC107985149 HSBP1L1 PARD6G CTDP1
esv3643313	Chr.18:79646532 - 79693043 on Build GRCh38	Gain	LOC105376875 LOC284241 CTDP1
esv3583194	Chr.18:79675787 - 79689956 on Build GRCh38	Loss	LOC105376875 LOC284241 CTDP1
nsv525694	Chr.18:79395184 - 79961125 on Build GRCh38	Loss	LOC284240 PQLC1 KCNG2 LOC105376875 LOC284241 NFATC1 CTDP1
nsv470437	Chr.18:79657934 - 80103778 on Build GRCh38	Loss	RBFA PQLC1 KCNG2 TXNL4A LOC105376875 RBFADN LOC284241 HSBP1L1 CTDP1
nsv519406	Chr.18:79630343 - 79897319 on Build GRCh38	Gain	KCNG2 LOC105376875 LOC284241 CTDP1
nsv1065902	Chr.18:78538045 - 80257174 on Build GRCh38	Gain	RBFA ADNP2 TXNL4A SALL3 PARD6G-AS1 ATP9B RBFADN LOC284241 NFATC1 LOC284240 PQLC1 KCNG2 LOC105376875 LOC100996274 LOC107985149 HSBP1L1 PARD6G CTDP1
nsv1064506	Chr.18:79580427 - 79773771 on Build GRCh38	Gain	LOC284240 LOC105376875 LOC284241 CTDP1
nsv1066888	Chr.18:79643023 - 79769924 on Build GRCh38	Gain	LOC105376875 LOC284241 CTDP1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase, hydrolase, metabolite interconversion enzyme

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
protein dephosphorylation
exit from mitosis
positive regulation of viral transcription
cell division
negative regulation of cell growth involved in cardiac muscle cell development
dephosphorylation of RNA polymerase II C-terminal domain

Function(s)

phosphoprotein phosphatase activity
protein binding
CTD phosphatase activity