Hs06910195_cn

• Gene Symbol: MIR4540
• Assay Reference Genome Location: Chr.9:36864291 on build GRCh38
• Cytoband: 9p13.2

Target Gene Details

• Entrez Gene ID: 100616278
• Gene Name: microRNA 4540
• Gene Aliases: -
• Location: Chr.9:36864254-36864308 on Build GRCh38
• Assay Gene Location:

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
MIR4540	NR_039766.1

Target Gene Details

• Entrez Gene ID: 5079
• Gene Name: paired box 5
• Gene Aliases: ALL3, BSAP
• Location: Chr.9:36833274-37035949 on Build GRCh38
• Assay Gene Location: Within Intron 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PAX5	NM_001280547.1			NP_001267476.1
	NM_001280548.1			NP_001267477.1
	NM_001280549.1			NP_001267478.1
	NM_001280550.1			NP_001267479.1
	NM_001280551.1			NP_001267480.1
	NM_001280552.1			NP_001267481.1
	NM_001280553.1			NP_001267482.1
	NM_001280554.1			NP_001267483.1
	NM_001280555.1			NP_001267484.1
	NM_001280556.1			NP_001267485.1
	NM_016734.2			NP_057953.1
	NR_103999.1
	NR_104000.1
	XM_005251481.4			XP_005251538.1
	XM_011517896.2			XP_011516198.1
	XM_011517897.2			XP_011516199.1
	AY463952.1			AAR27590.1
	AY463953.1			AAR27591.1
	AY463954.1			AAR27592.1
	AY463955.1			AAR27593.1
	AY463956.1			AAR27594.1
	AY463957.1			AAR27595.1
	FJ626406.1
	FJ626407.1
	FJ626408.1
	FJ626409.1
	FJ626410.1
	FJ626411.1
	FJ626412.1
	FJ626413.1
	FJ626419.1
	FJ626420.1
	FJ626421.1
	FJ626422.1
	FJ626423.1
	FJ626424.1
	FJ626425.1
	M96944.1			AAA58397.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv6531	Chr.9:36832805 - 36876608 on Build GRCh38	Deletion	MIR4540 PAX5
nsv614212	Chr.9:36856271 - 36885586 on Build GRCh38	Loss	MIR4540 PAX5

More Information

Additional Information:

For this assay, SNP(s) [rs141426259,rs576786508] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
humoral immune response
multicellular organism development
spermatogenesis
aging
organ morphogenesis
lateral ventricle development
cerebral cortex development
adult behavior
skeletal muscle cell differentiation
positive regulation of transcription from RNA polymerase II promoter
embryonic cranial skeleton morphogenesis
negative regulation of histone H3-K9 methylation

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
protein binding