Hs07036700_cn

• Gene Symbol: PCDH9
• Assay Reference Genome Location: Chr.13:66835176 on build GRCh38
• Cytoband: 13q21.32

Target Gene Details

• Entrez Gene ID: 5101
• Gene Name: protocadherin 9
• Gene Aliases: -
• Location: Chr.13:66302834-67230336 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDH9	NM_001318372.1			NP_001305301.1
	NM_001318373.1			NP_001305302.1
	NM_020403.4			NP_065136.1
	NM_203487.2			NP_982354.1
	XM_017020619.1			XP_016876108.1
	AF169692.2			AAF89689.2
	AL834258.1			CAD38933.1
	BC136626.1
	BC136627.1
	BC144321.1
	BX537422.1			CAD97664.1
	KJ534915.1

Target Gene Details

• Entrez Gene ID: 100874064
• Gene Name: PCDH9 antisense RNA 2
• Gene Aliases: -
• Location: Chr.13:66825169-66915031 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDH9-AS2	NR_046527.1
	BX117607.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1051576	Chr.13:66748615 - 66946123 on Build GRCh38	Loss	PCDH9-AS2 PCDH9
nsv523360	Chr.13:66748582 - 66946212 on Build GRCh38	Loss	PCDH9-AS2 PCDH9
nsv562136	Chr.13:66781486 - 66911015 on Build GRCh38	Gain	PCDH9-AS2 PCDH9
nsv1042756	Chr.13:66778307 - 66871735 on Build GRCh38	Loss	PCDH9-AS2 PCDH9
nsv455933	Chr.13:66818166 - 66863184 on Build GRCh38	Loss	PCDH9-AS2 PCDH9

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
forebrain development

Function(s)

calcium ion binding