Hs07405648_cn

• Gene Symbol: ABCA17P
• Assay Reference Genome Location: Chr.16:2341307 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 650655
• Gene Name: ATP binding cassette subfamily A member 17, pseudogene
• Gene Aliases: ABCA17
• Location: Chr.16:2340922-2426699 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ABCA17P	NR_003574.1	1	386
	AK095200.1	1	337
	DQ266102.1	1	386
	DQ660314.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	MEIOB LOC107987233 HBM DECR2 ABCA17P RAB26 C16orf91 CCNF SPSB3 MCRIP2 RAB40C MSRB1 TRAF7 JMJD8 ERVK13-1 TPSB2 RNF151 TSR3 MPG PRR25 TBC1D24 RHBDF1 PRSS27 EME2 LOC105371049 RPUSD1 WASIR2 MIR6768 MIR3180-5 SSTR5-AS1 AXIN1 DNASE1L2 C16orf59 PRR35 MIR5587 STUB1 ATP6V0C C1QTNF8 IGFALS SNHG9 RAB11FIP3 WDR90 GNPTG LOC105371046 LINC00254 CRAMP1 LOC652276 NME4 IFT140 HN1L LOC105371045 AMDHD2 TPSD1 RHBDL1 LOC101929280 SNRNP25 NHLRC4 CHTF18 UNKL HBZ CLCN7 NTN3 TBL3 LMF1-AS1 SOX8 SSTR5 MIR3176 SNORA10 LOC105371047 E4F1 GNG13 RHOT2 SNORA64 SNORA78 GFER MAPK8IP3 SLC9A3R2 METRN ARHGDIG NPRL3 RPL3L LMF1 BRICD5 RPL23AP5 NPW FAM234A MRPL28 RNPS1 CEMP1 NME3 MIR4717 LOC100134368 TPSG1 SNHG19 NOXO1 DDX11L10 PDPK1 ECI1 LOC105371038 NTHL1 MRPS34 SYNGR3 LOC100287175 MIR3178 MIR3677 PDIA2 FBXL16 FAHD1 HBA2 HAGH LOC729652 CCDC78 SNORD60 PRSS29P TMEM204 HBQ1 TELO2 LOC105371184 MIR662 MIR1225 FLJ42627 LOC106660606 HAGHL TMEM8A LINC00235 PGP MIR3177 PKD1 ABCA3 KCTD5 PTX4 TPSAB1 RPS2 UBE2I CASKIN1 NDUFB10 LOC107984876 TSC2 MIR4516 MIR6511B1 WDR24 MLST8 MIR6767 POLR3K HS3ST6 RGS11 HBA1 LUC7L WFIKKN1 ZNF598 METTL26 CACNA1H BAIAP3 CCDC154 NARFL MIR940 MIR6859-4 FAM173A PIGQ NUBP2 CAPN15 MSLN
nsv571201	Chr.16:2255538 - 2365929 on Build GRCh38	Loss	LOC106660606 MIR3677 MIR940 ABCA17P ABCA3 RNPS1 MIR4717
nsv1131103	Chr.16:2340199 - 2343199 on Build GRCh38	Deletion	ABCA17P ABCA3
nsv827512	Chr.16:2339663 - 2342655 on Build GRCh38	Gain	ABCA17P ABCA3
nsv1052260	Chr.16:2074546 - 2629655 on Build GRCh38	Gain	LOC106660606 ATP6V0C BRICD5 PGP ABCA17P RAB26 PKD1 CCNF ABCA3 RNPS1 CEMP1 MIR4717 LOC652276 CASKIN1 TRAF7 SNHG19 PDPK1 ECI1 AMDHD2 TSC2 MIR4516 MIR3178 MIR3677 MIR6511B1 MLST8 MIR6767 TBC1D24 NTN3 LOC729652 LOC105371049 MIR6768 MIR940 SNORD60 MIR3180-5 E4F1 DNASE1L2 C16orf59 MIR1225

More Information

Additional Information:

For this assay, SNP(s) [rs75759687] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation