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Gene Symbol
ALYREF
Assay Reference Genome
Location

Chr.17:81890421 on build GRCh38
Cytoband
17q25.3
Assay ID Hs07503344_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10189

Gene Name:

 Aly/REF export factor

Gene Aliases:

 ALY, ALY/REF, BEF, REF, THOC4

Location:

 Chr.17:81887835-81891622 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ALYREF NM_005782.3 NP_005773.3
AF047002.1 AAD09608.1
AF086513.1
BC052302.1 AAH52302.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv33475 Chr.17:81871555 - 81891535 on Build GRCh38 Gain+Loss ALYREF ANAPC11
esv3641407 Chr.17:81858294 - 81890680 on Build GRCh38 Gain ALYREF ARHGDIA P4HB
nsv952392 Chr.17:81885825 - 82065724 on Build GRCh38 Deletion SIRT7 RFNG NPB LRRC45 ASPSCR1 GPS1 RAC3 DUS1L ANAPC11 MAFG PCYT2 PYCR1 MYADML2 DCXR ALYREF MAFG-AS1 NOTUM STRA13
nsv428351 Chr.17:81152631 - 83064073 on Build GRCh38 Gain SIRT7 LINC00482 OGFOD3 OXLD1 NPB FOXK2 SNORD134 ARL16 AATK RAB40B P4HB MAFG ZNF750 MYADML2 TMEM105 GCGR LOC100130370 NARF MIR4740 TEX19 CCDC137 TEPSIN C17orf89 AATK-AS1 GPS1 FN3KRP LOC101929511 ANAPC11 UTS2R NPLOC4 PCYT2 PYCR1 C17orf62 FSCN2 HEXDC NOTUM STRA13 MRPL12 SLC25A10 MIR6786 SLC38A10 ACTG1 B3GNTL1 LRRC45 ASPSCR1 DUS1L LOC101929552 LOC105376790 SLC16A3 MCRIP1 ALYREF PDE6G CSNK1D HGS TSPAN10 PPP1R27 MIR4525 ARHGDIA FN3K TBCD RFNG LOC105371925 CEP131 CCDC57 RAC3 BAHCC1 MIR6787 LOC105371944 MIR3186 FASN DCXR FAAP100 MAFG-AS1 LOC105376791 CD7 WDR45B SECTM1
nsv470620 Chr.17:81516973 - 82064485 on Build GRCh38 Loss MIR6786 SIRT7 OXLD1 NPB LRRC45 ASPSCR1 ARL16 DUS1L P4HB MAFG MYADML2 MCRIP1 ALYREF PDE6G GCGR HGS TSPAN10 PPP1R27 CCDC137 ARHGDIA RFNG GPS1 RAC3 ANAPC11 NPLOC4 PCYT2 PYCR1 FSCN2 DCXR FAAP100 MAFG-AS1 NOTUM STRA13 MRPL12 SLC25A10
nsv833569 Chr.17:81838937 - 82011412 on Build GRCh38 Loss SIRT7 ARHGDIA NPB ASPSCR1 ANAPC11 P4HB MAFG PCYT2 PYCR1 MYADML2 ALYREF MAFG-AS1 NOTUM
esv21913 Chr.17:81828123 - 83103548 on Build GRCh38 Gain+Loss SIRT7 OGFOD3 NPB FOXK2 SNORD134 RAB40B P4HB MAFG ZNF750 MYADML2 NARF TEX19 GPS1 FN3KRP LOC101929511 ANAPC11 UTS2R PCYT2 PYCR1 C17orf62 METRNL HEXDC NOTUM STRA13 B3GNTL1 LRRC45 ASPSCR1 DUS1L LOC101929552 LOC105376790 SLC16A3 MCRIP1 ALYREF CSNK1D PPP1R27 MIR4525 ARHGDIA FN3K TBCD RFNG CCDC57 RAC3 MIR6787 LOC105371944 FASN DCXR MAFG-AS1 LOC105376791 CD7 WDR45B SECTM1

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More Information


Additional Information:

For this assay, SNP(s) [rs139424088] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)


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