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See other CNOT3 CNV Assays ›
Gene Symbol
CNOT3
Assay Reference Genome
Location

Chr.19:54137681 on build GRCh38
Cytoband
19q13.42
Assay ID Hs07533746_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 4849

Gene Name:

 CCR4-NOT transcription complex subunit 3

Gene Aliases:

 LENG2, NOT3, NOT3H

Location:

 Chr.19:54137689-54155708 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CNOT3 NM_014516.3 NP_055331.1
XM_005278279.1 XP_005278336.1
XM_005278280.2 XP_005278337.1
XM_005278281.1 XP_005278338.1
XM_005278282.2 XP_005278339.1
XM_011526992.1 XP_011525294.1
XM_011526993.2 XP_011525295.1
BQ439042.1
DB076207.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv515623 Chr.19:54102901 - 54179150 on Build GRCh38 Loss TFPT MBOAT7 PRPF31 CNOT3 LENG1 TMC4 NDUFA3
nsv953613 Chr.19:54097214 - 54198733 on Build GRCh38 Deletion TFPT MBOAT7 PRPF31 OSCAR TSEN34 CNOT3 LENG1 TMC4 NDUFA3
esv2718812 Chr.19:53184636 - 54322450 on Build GRCh38 Deletion MIR498 MIR518F MIR512-2 MIR512-1 LOC105372457 MIR516A2 ZNF677 ZNF818P FAM90A27P LILRB3 MIR516A1 CACNG7 CACNG8 LOC284379 MIR372 MIR524 MIR520B MIR520E OSCAR VN1R2 NDUFA3 NLRP12 MIR520H MIR518A2 MIR515-2 MIR527 MIR519E MIR520C TSEN34 MIR519B CNOT3 MIR517B MIR519D MIR525 MIR523 MIR520A MIR518E ZNF665 MIR519A1 MIR526A2 ZNF765 VSTM1 MIR517A ZNF761 MYADM TPM3P9 PRKCG MIR520D LILRA6 MIR519A2 MIR518A1 MIR526B MIR4752 MIR520F DPRX MIR522 MIR935 MIR518C MIR519C MIR516B1 LILRA5 MIR518B MBOAT7 MIR371B MIR1323 LENG1 VN1R4 MIR520G MIR1283-2 LILRB2 RPS9 MIR518D BIRC8 MIR521-1 MIR516B2 ZNF331 TMC4 LILRB5 TARM1 ZNF813 TFPT CACNG6 MIR517C PRPF31 MIR521-2 MIR371A MIR1283-1 ZNF525 MIR373 MIR526A1 MIR515-1 ZNF845
esv24700 Chr.19:54137167 - 54137842 on Build GRCh38 Loss CNOT3
nsv2545 Chr.19:54122949 - 54142607 on Build GRCh38 Insertion PRPF31 CNOT3

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More Information


Additional Information:

For this assay, SNP(s) [rs376542861] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

general transcription factor

Gene Ontology Categories:

Function(s) Process(es)


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