Dr03105701_s1 Best Coverage

• Gene Symbol: sox11a
• Gene Name: SRY-box transcription factor 11a
• Gene Aliases: cb237, id:ibd2104, wu:fb16g02, zgc:136533
• Chromosome Location: Chr.17: 35878547 - 35881807 on Build GRCz11
• Species: Zebrafish
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: sox11a
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_131336.1	NP_571411.1	1	945		102
GenBank mRNA	AJ237812.1	-	1	945		102
	BC115164.1	-	1	971		102
	BC139605.1	-	1	951		102
	BC164369.1	-	1	905		102
	U85090.1	-	1	910		102

More Information

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Danio rerio, Both primers and probe map within a single exon

Panther Classification:

Molecular Function -

HMG box transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
lens development in camera-type eye
regulation of transcription, DNA-templated
brain development
anatomical structure morphogenesis
cell differentiation
neuron differentiation
negative regulation of smoothened signaling pathway
positive regulation of transcription from RNA polymerase II promoter
retinal rod cell development
camera-type eye morphogenesis
closure of optic fissure

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding