Hs00220480_m1

• Gene Symbol: COL8A1
• Gene Name: collagen type VIII alpha 1
• Gene Aliases: C3orf7
• Chromosome Location: Chr.3: 99638596 - 99796733 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: COL8A1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001850.4	NP_001841.2	1 - 2	72		69
GenBank mRNA	AF170702.1	-	1 - 2	57		69
	AK311449.1	-	1 - 2	72		69
	BC013581.1	-	1 - 2	50	3875911	69

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300008130.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03000502.hg.1

Additional Information:

This assay is in the 5'UTR region of the AF170702.1,BC013581.1,NM_001850.4 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Homo sapiens, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene COL8A1

Panther Classification:

Molecular Function -

extracellular matrix structural protein

Gene Ontology Categories:

Process(es)

angiogenesis
cell adhesion
positive regulation of cell-substrate adhesion
extracellular matrix organization
collagen catabolic process
endodermal cell differentiation
camera-type eye morphogenesis
epithelial cell proliferation

Function(s)

protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0300011830.hg.1	ENST00000584795.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03009420.hg.1	TC03000502.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03009420.hg.1	ENST00000261037.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03009420.hg.1	ENST00000463753.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03009420.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000462604.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000462604.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300011830.hg.1	ENST00000584795.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300157896.hg.1	TC0300008130.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000462604.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000462604.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq

Array Name	Probe IDs	Targets	Target Type
ABI Human Genome Survey Microarray Version 2.0	219384	-	-
ABI Human Genome Survey Microarray Version 2.0	222934	-	-