Hs00932858_m1

• Gene Symbol: CIITA
• Gene Name: class II, major histocompatibility complex, transactivator
• Gene Aliases: C2TA, CIITAIV, MHC2TA, NLRA
• Chromosome Location: Chr.16: 10866208 - 10941562 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CIITA
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_000246.3	NP_000237.2	11 - 12	2793		91
	NM_001286402.1	NP_001273331.1	11 - 12	2796		91
	XM_006720880.3	XP_006720943.2	11 - 12	2974		91
	XM_011522484.2	XP_011520786.1	11 - 12	2974		91
	XM_011522485.2	XP_011520787.1	11 - 12	2974		91
	XM_011522486.2	XP_011520788.1	11 - 12	2976		91
	XM_011522487.2	XP_011520789.1	10 - 11	2711		91
	XM_011522488.2	XP_011520790.1	11 - 12	4205		91
	XM_011522489.2	XP_011520791.1	10 - 11	2708		91
	XM_011522490.2	XP_011520792.1	11 - 12	4203		91
	XM_011522491.2	XP_011520793.1	11 - 12	2976		91
	XM_011522492.2	XP_011520794.1	11 - 12	2922		91
	XM_011522493.2	XP_011520795.1	11 - 12	2919		91
	XM_011522494.2	XP_011520796.1	11 - 12	2686		91
	XM_011522495.2	XP_011520797.1	10 - 11	2777		91
	XM_011522496.2	XP_011520798.1	10 - 11	2774		91
GenBank mRNA	AY699071.1	-	10 - 11	2591		91
	U18259.1	-	11 - 12	2798		91
	X74301.1	-	11 - 12	2775		91

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1600006888.hg.1
This assay targets the same location as HTA transcript cluster(s) TC16000158.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CIITA

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
immune response
phosphorylation
negative regulation of collagen biosynthetic process
response to interferon-gamma
positive regulation of MHC class I biosynthetic process
positive regulation of MHC class II biosynthetic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
response to antibiotic
interferon-gamma-mediated signaling pathway

Function(s)

DNA binding
transcription coactivator activity
protein binding
ATP binding
GTP binding
protein C-terminus binding
kinase activity
transferase activity, transferring acyl groups
protein complex binding
activating transcription factor binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR16002416.hg.1	ENST00000324288.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16002416.hg.1	ENST00000381835.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16002416.hg.1	NM_000246.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16002416.hg.1	TC16000158.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	ENST00000324288.12	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	ENST00000381835.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	ENST00000570546.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	ENST00000618327.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	NM_000246.3	Refseq
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	NM_001286402.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	NM_001286403.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	ENST00000324288.12	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	ENST00000381835.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	ENST00000570546.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	ENST00000618327.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	NM_000246.3	Refseq
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	NM_001286402.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	NM_001286403.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600148985.hg.1	TC1600006888.hg.1	Clariom D TC