Hs00932860_m1

• Gene Symbol: CIITA
• Gene Name: class II, major histocompatibility complex, transactivator
• Gene Aliases: C2TA, CIITAIV, MHC2TA, NLRA
• Chromosome Location: Chr.16: 10866208 - 10941562 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CIITA
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_000246.3	NP_000237.2	13 - 14	3020		85
	NM_001286402.1	NP_001273331.1	13 - 14	3023		85
	NM_001286403.1	NP_001273332.1	11 - 12	1268		85
	NR_104444.1		11 - 12	1210		85
	XM_006720880.3	XP_006720943.2	13 - 14	3201		85
	XM_011522484.2	XP_011520786.1	13 - 14	3201		85
	XM_011522485.2	XP_011520787.1	13 - 14	3201		85
	XM_011522486.2	XP_011520788.1	13 - 14	3203		85
	XM_011522487.2	XP_011520789.1	12 - 13	2938		85
	XM_011522488.2	XP_011520790.1	13 - 14	4432		85
	XM_011522489.2	XP_011520791.1	12 - 13	2935		85
	XM_011522490.2	XP_011520792.1	13 - 14	4430		85
	XM_011522491.2	XP_011520793.1	13 - 14	3203		85
	XM_011522492.2	XP_011520794.1	13 - 14	3149		85
	XM_011522493.2	XP_011520795.1	13 - 14	3146		85
	XM_011522494.2	XP_011520796.1	13 - 14	2913		85
	XM_011522495.2	XP_011520797.1	12 - 13	3004		85
	XM_011522496.2	XP_011520798.1	12 - 13	3001		85
GenBank mRNA	AF410154.1	-	13 - 14	3901		85
	AY084054.1	-	11 - 12	1258		85
	AY699071.1	-	12 - 13	2818		85
	U18259.1	-	13 - 14	3025		85
	X74301.1	-	13 - 14	3002		85

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1600006888.hg.1
This assay targets the same location as HTA transcript cluster(s) TC16000158.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CIITA

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
immune response
phosphorylation
negative regulation of collagen biosynthetic process
response to interferon-gamma
positive regulation of MHC class I biosynthetic process
positive regulation of MHC class II biosynthetic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
response to antibiotic
interferon-gamma-mediated signaling pathway

Function(s)

DNA binding
transcription coactivator activity
protein binding
ATP binding
GTP binding
protein C-terminus binding
kinase activity
transferase activity, transferring acyl groups
protein complex binding
activating transcription factor binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR16002419.hg.1	ENST00000324288.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16002419.hg.1	ENST00000381835.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16002419.hg.1	NM_000246.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16002419.hg.1	TC16000158.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	ENST00000324288.12	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	ENST00000381835.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	ENST00000570546.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	ENST00000618207.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	ENST00000618327.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	NM_000246.3	Refseq
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	NM_001286402.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	NM_001286403.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	NR_104444.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	ENST00000324288.12	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	ENST00000381835.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	ENST00000570546.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	ENST00000618207.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	ENST00000618327.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	NM_000246.3	Refseq
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	NM_001286402.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	NM_001286403.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	NR_104444.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600148988.hg.1	TC1600006888.hg.1	Clariom D TC