Hs00941952_m1

• Gene Symbol: SYNE1
• Gene Name: spectrin repeat containing nuclear envelope protein 1
• Gene Aliases: 8B, ARCA1, C6orf98, CPG2, EDMD4, MYNE1, Nesp1, SCAR8, dJ45H2.2
• Chromosome Location: Chr.6: 152121684 - 152637399 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SYNE1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_033071.3	NP_149062.1	127 - 128	23526		57
	NM_182961.3	NP_892006.3	128 - 129	23904		57
	XM_006715407.1	XP_006715470.1	128 - 129	23817		57
	XM_006715408.2	XP_006715471.1	128 - 129	23809		57
	XM_006715409.1	XP_006715472.1	127 - 128	23796		57
	XM_006715410.2	XP_006715473.1	128 - 129	23821		57
	XM_006715411.1	XP_006715474.1	127 - 128	23766		57
	XM_006715412.2	XP_006715475.1	128 - 129	23806		57
	XM_006715413.2	XP_006715476.1	128 - 129	23821		57
	XM_006715414.1	XP_006715477.1	126 - 127	23745		57
	XM_006715415.2	XP_006715478.1	128 - 129	23821		57
	XM_006715416.2	XP_006715479.1	128 - 129	23806		57
	XM_006715417.2	XP_006715480.1	127 - 128	23680		57
	XM_006715420.2	XP_006715483.1	127 - 128	23668		57
	XM_006715421.2	XP_006715484.1	127 - 128	23665		57
	XM_006715422.1	XP_006715485.1	127 - 128	23658		57
	XM_006715423.2	XP_006715486.1	128 - 129	23821		57
	XM_006715424.2	XP_006715487.1	128 - 129	23821		57
	XM_006715425.2	XP_006715488.1	128 - 129	23821		57
	XM_011535641.2	XP_011533943.1	128 - 129	23818		57
	XM_011535642.2	XP_011533944.1	128 - 129	23806		57
	XM_011535643.1	XP_011533945.1	127 - 128	23652		57
	XM_011535644.1	XP_011533946.1	114 - 115	21868		57
	XM_011535645.2	XP_011533947.1	110 - 111	21261		57
	XM_017010608.1	XP_016866097.1	129 - 130	23936		57
	XM_017010609.1	XP_016866098.1	128 - 129	23743		57
	XM_017010610.1	XP_016866099.1	127 - 128	23722		57
	XM_017010611.1	XP_016866100.1	127 - 128	23525		57
	XM_017010612.1	XP_016866101.1	126 - 127	23449		57
	XM_017010613.1	XP_016866102.1	128 - 129	23818		57
	XM_017010614.1	XP_016866103.1	127 - 128	23665		57
	XM_017010615.1	XP_016866104.1	127 - 128	23665		57
	XM_017010616.1	XP_016866105.1	128 - 129	23821		57
	XM_017010617.1	XP_016866106.1	128 - 129	23818		57
	XM_017010618.1	XP_016866107.1	128 - 129	23806		57
	XM_017010619.1	XP_016866108.1	114 - 115	21900		57
GenBank mRNA	AB018339.2	-	16 - 17	2541		57
	AF444779.1	-	3 - 4	414		57
	AF495910.1	-	128 - 129	23904		57
	AF535142.1	-	127 - 128	23526		57
	AK122691.1	-	8 - 9	1184		57
	AK127076.1	-	12 - 13	1881		57
	AK316101.1	-	1 - 2	121		57
	AY061755.1	-	43 - 44	6994		57
	AY184206.1	-	41 - 42	6889		57
	BC090927.1	-	1 - 2	166		57
	BX537837.1	-	10 - 11	1482		57
	BX647837.1	-	13 - 14	2076		57

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600013588.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06002238.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK316101.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SYNE1

Gene Ontology Categories:

Process(es)

nucleus organization
Golgi organization
establishment of nucleus localization
muscle cell differentiation
cytoskeletal anchoring at nuclear membrane
nuclear matrix anchoring at nuclear membrane

Function(s)

actin binding
protein binding
lamin binding
protein homodimerization activity
poly(A) RNA binding
actin filament binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR06027949.hg.1	TC06002238.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06027949.hg.1	ENST00000265368.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06027949.hg.1	ENST00000341594.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06027949.hg.1	ENST00000356820.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06027949.hg.1	ENST00000367255.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06027949.hg.1	ENST00000423061.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06027949.hg.1	ENST00000448038.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06027949.hg.1	NM_033071.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06027949.hg.1	NM_182961.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000341594.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000367251.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000367255.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000367256.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000367257.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000409694.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000423061.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000536990.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	NM_033071.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	NM_182961.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000341594.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000367251.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000367255.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000367256.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000367257.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000409694.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000423061.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	ENST00000536990.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	NM_033071.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	NM_182961.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600193792.hg.1	TC0600013588.hg.1	Clariom D TC