Hs01007471_m1

• Gene Symbol: COL4A1
• Gene Name: collagen type IV alpha 1 chain
• Gene Aliases: BSVD, RATOR
• Chromosome Location: Chr.13: 110148958 - 110307157 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: COL4A1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001845.5	NP_001836.3	50 - 51	4887		64
	XM_011521048.2	XP_011519350.1	50 - 51	12819		64
GenBank mRNA	AB209646.1	-	43 - 44	3818		64
	AF258349.1	-	3 - 4	437		64
	AF363672.1	-	3 - 4	437		64
	AF400431.1	-	3 - 4	437		64
	AF536207.1	-	3 - 4	437		64
	AY285780.1	-	3 - 4	437		64
	BC047305.1	-	25 - 26	2976		64
	BC151220.1	-	50 - 51	4871	40148649	64
	DQ464183.1	-	3 - 4	437		64
	EU260121.1	-	3 - 4	437		64
	M11315.1	-	8 - 9	983		64

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1300009781.hg.1
This assay targets the same location as HTA transcript cluster(s) TC13000872.hg.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene COL4A1

Panther Classification:

Molecular Function -

extracellular matrix structural protein

Gene Ontology Categories:

Process(es)

patterning of blood vessels
brain development
neuromuscular junction development
extracellular matrix organization
collagen catabolic process
epithelial cell differentiation
blood vessel morphogenesis
retinal blood vessel morphogenesis
renal tubule morphogenesis
cellular response to amino acid stimulus
basement membrane organization

Function(s)

extracellular matrix structural constituent
protein binding
extracellular matrix constituent conferring elasticity
platelet-derived growth factor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR13009706.hg.1	ENST00000375815.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009706.hg.1	ENST00000375820.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009706.hg.1	ENST00000397198.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13009706.hg.1	NM_001845.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13009706.hg.1	TC13000872.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1300165164.hg.1	ENST00000375820.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165164.hg.1	NM_001845.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300165164.hg.1	ENST00000375820.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165164.hg.1	NM_001845.5	Refseq
Affymetrix Human Clariom D Assay	PSR1300165164.hg.1	TC1300009781.hg.1	Clariom D TC