Hs01064863_m1

• Gene Symbol: SMG5
• Gene Name: SMG5, nonsense mediated mRNA decay factor
• Gene Aliases: EST1B, LPTS-RP1, LPTSRP1, SMG-5
• Chromosome Location: Chr.1: 156249224 - 156291498 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SMG5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001323614.1	NP_001310543.1	5 - 6	759		77
	NM_001323615.1	NP_001310544.1	5 - 6	759		77
	NM_001323616.1	NP_001310545.1	6 - 7	891		77
	NM_001323617.1	NP_001310546.1	6 - 7	726		77
	NM_015327.2	NP_056142.2	5 - 6	698		77
	XM_017000843.1	XP_016856332.1	5 - 6	705		77
GenBank mRNA	AB029012.2	-	5 - 6	700		77
	AB085691.1	-	5 - 6	626		77
	AK092183.1	-	5 - 6	674		77
	AY168922.1	-	5 - 6	552		77
	AY336728.1	-	5 - 6	549		77
	BC038296.1	-	5 - 6	699	4824487	77

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0100015991.hg
This assay targets the same location as HTA transcript cluster(s) TC01003334.hg

Additional Information:

This assay is in the 5'UTR region of the XM_017000843.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SMG5

Panther Classification:

Molecular Function -

RNA metabolism protein

Gene Ontology Categories:

Process(es)

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
mRNA export from nucleus
regulation of telomere maintenance
regulation of telomere maintenance via telomerase
regulation of dephosphorylation

Function(s)

protein binding
ubiquitin protein ligase binding
telomeric DNA binding
histone deacetylase binding
protein phosphatase 2A binding
DNA polymerase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01051967.hg.1	TC01003334.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR01051967.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01051967.hg.1	ENST00000368267.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01051967.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100221118.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0100221118.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100221118.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0100221118.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100221118.hg.1	TC0100015991.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000361813.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000468993.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000473643.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000476954.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	ENST00000489907.2	Ensembl
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq
Affymetrix Human Clariom D Assay	TC0100015991.hg.1	NM_015327.2	Refseq