Hs01083468_m1

• Gene Symbol: COL16A1
• Gene Name: collagen type XVI alpha 1 chain
• Gene Aliases: 447AA, FP1572
• Chromosome Location: Chr.1: 31652247 - 31704167 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: COL16A1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001856.3	NP_001847.3	11 - 12	1347		81
	XM_005270481.1	XP_005270538.1	11 - 12	1342		81
	XM_011540722.1	XP_011539024.1	11 - 12	1342		81
	XM_011540723.1	XP_011539025.1	11 - 12	1342		81
	XM_011540724.1	XP_011539026.1	11 - 12	1342		81
	XM_011540726.2	XP_011539028.1	8 - 9	858		81
	XM_011540729.1	XP_011539031.1	11 - 12	1342		81
	XM_011540730.1	XP_011539032.1	11 - 12	1342		81
	XM_017000338.1	XP_016855827.1	11 - 12	1342		81
	XM_017000339.1	XP_016855828.1	11 - 12	1342		81
GenBank mRNA	AB209571.1	-	7 - 8	654		81
	M92642.1	-	12 - 13	1135		81

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0100013576.hg.1
This assay targets the same location as HTA transcript cluster(s) TC01002456.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene COL16A1

Panther Classification:

Molecular Function -

extracellular matrix protein, extracellular matrix structural protein

Gene Ontology Categories:

Process(es)

cell adhesion
integrin-mediated signaling pathway
female pregnancy
extracellular matrix organization
integrin activation
cell adhesion mediated by integrin
positive regulation of focal adhesion assembly
cellular response to amino acid stimulus

Function(s)

integrin binding
protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR01037866.hg.1	TC01002456.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR01037866.hg.1	ENST00000373668.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01037866.hg.1	ENST00000373672.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01037866.hg.1	NM_001856.3	Refseq
Affymetrix Human Clariom D Assay	PSR0100200826.hg.1	ENST00000373668.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0100200826.hg.1	ENST00000373672.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0100200826.hg.1	NM_001856.3	Refseq
Affymetrix Human Clariom D Assay	PSR0100200826.hg.1	ENST00000373668.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0100200826.hg.1	ENST00000373672.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0100200826.hg.1	NM_001856.3	Refseq
Affymetrix Human Clariom D Assay	PSR0100200826.hg.1	TC0100013576.hg.1	Clariom D TC