Hs01113635_m1

• Gene Symbol: SHROOM2
• Gene Name: shroom family member 2
• Gene Aliases: APXL, HSAPXL
• Chromosome Location: Chr.X: 9786406 - 9949443 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SHROOM2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001320663.1	NP_001307592.1	4 - 5	1641		74
	NM_001649.3	NP_001640.1	8 - 9	4406		74
	XM_011545506.1	XP_011543808.1	4 - 5	1518		74
	XM_017029493.1	XP_016884982.1	4 - 5	2011		74
GenBank mRNA	AK096596.1	-	4 - 5	1972		74
	AK299907.1	-	4 - 5	1641		74
	BC140866.1	-	8 - 9	4367	9021734	74
	X83543.1	-	8 - 9	4406		74

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0X00006585.hg.1
This assay targets the same location as HTA transcript cluster(s) TC0X000034.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Ion Channel, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SHROOM2

Panther Classification:

Molecular Function -

actin or actin-binding cytoskeletal protein

Gene Ontology Categories:

Process(es)

cell morphogenesis
lens morphogenesis in camera-type eye
brain development
eye pigment granule organization
cell migration
establishment of melanosome localization
melanosome organization
sodium ion transmembrane transport
camera-type eye development
cellular pigment accumulation
ear development
apical protein localization
camera-type eye morphogenesis
actin filament bundle assembly

Function(s)

actin binding
protein binding
beta-catenin binding
ligand-gated sodium channel activity
actin filament binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000493668.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000493668.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	ENST00000493668.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X000460.hg.1	TC0X000034.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR0X000460.hg.1	ENST00000380913.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X000460.hg.1	ENST00000418909.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X000460.hg.1	ENST00000540923.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X000460.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	PSR0X00145000.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00145000.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00145000.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00145000.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	PSR0X00145000.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00145000.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00145000.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00145000.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	PSR0X00145000.hg.1	TC0X00006585.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000380913.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000418909.6	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000452575.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000493668.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000493668.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	ENST00000493668.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00006585.hg.1	NM_001649.3	Refseq