Hs01574785_g1

• Gene Symbol: COL7A1
• Gene Name: collagen type VII alpha 1
• Gene Aliases: EBD1, EBDCT, EBR1, NDNC8
• Chromosome Location: Chr.3: 48564073 - 48595302 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: COL7A1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_000094.3	NP_000085.1	63 - 64	5485		132
	XM_011533337.1	XP_011531639.1	64 - 65	5520		132
	XM_017005688.1	XP_016861177.1	64 - 65	5520		132
	XM_017005689.1	XP_016861178.1	64 - 65	5520		132
	XM_017005690.1	XP_016861179.1	64 - 65	5520		132
	XM_017005691.1	XP_016861180.1	64 - 65	5520		132
	XM_017005692.1	XP_016861181.1	64 - 65	5520		132
GenBank mRNA	AB209645.1	-	29 - 30	1401		132
	L02870.1	-	63 - 64	5597		132

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300011028.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03001382.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Detect Genomic DNA, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene COL7A1

Panther Classification:

Molecular Function -

extracellular matrix structural protein

Gene Ontology Categories:

Process(es)

ER to Golgi vesicle-mediated transport
cell adhesion
epidermis development
negative regulation of endopeptidase activity
extracellular matrix organization
collagen catabolic process
endodermal cell differentiation
COPII vesicle coating

Function(s)

serine-type endopeptidase inhibitor activity
protein binding
identical protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR03024110.hg.1	TC03001382.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03024110.hg.1	ENST00000328333.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03024110.hg.1	ENST00000454817.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03024110.hg.1	NM_000094.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300180892.hg.1	ENST00000328333.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180892.hg.1	ENST00000487017.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180892.hg.1	NM_000094.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300180892.hg.1	ENST00000328333.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180892.hg.1	ENST00000487017.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300180892.hg.1	NM_000094.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300180892.hg.1	TC0300011028.hg.1	Clariom D TC