Hs01583919_m1 Best Coverage

• Gene Symbol: PRPF40B
• Gene Name: pre-mRNA processing factor 40 homolog B
• Gene Aliases: HYPC
• Chromosome Location: Chr.12: 49622717 - 49644669 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: PRPF40B
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001031698.2	NP_001026868.2	16 - 17	1735		118
	NM_012272.2	NP_036404.1	15 - 16	2025		118
	XM_006719324.3	XP_006719387.1	15 - 16	2789		118
	XM_006719325.3	XP_006719388.1	15 - 16	2789		118
	XM_011538135.2	XP_011536437.1	15 - 16	2789		118
	XM_011538136.2	XP_011536438.1	15 - 16	2789		118
	XM_011538137.2	XP_011536439.1	14 - 15	2708		118
	XM_011538138.2	XP_011536440.1	14 - 15	2678		118
	XM_011538139.2	XP_011536441.1	16 - 17	1729		118
	XM_011538140.2	XP_011536442.1	16 - 17	1729		118
	XM_011538141.1	XP_011536443.1	15 - 16	1555		118
	XM_011538143.2	XP_011536445.1	15 - 16	1571		118
	XM_011538144.2	XP_011536446.1	14 - 15	1444		118
	XM_017019135.1	XP_016874624.1	15 - 16	1492		118
	XM_017019136.1	XP_016874625.1	14 - 15	1444		118
	XM_017019137.1	XP_016874626.1	14 - 15	1444		118
	XM_017019138.1	XP_016874627.1	15 - 16	2789		118
	XM_017019139.1	XP_016874628.1	11 - 12	1455		118
GenBank mRNA	AL137459.1	-	2 - 3	238		118
	AL834216.1	-	15 - 16	2025		118
	BC031917.1	-	13 - 14	1331		118
	BC050398.2	-	16 - 17	1571		118
	BC067364.1	-	15 - 16	1556	6644672	118

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1200012626.hg.1
This assay targets the same location as HTA transcript cluster(s) TC12000377.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Recommended Assay, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene PRPF40B

Gene Ontology Categories:

Process(es)

mRNA splicing, via spliceosome

Function(s)

RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR12004680.hg.1	ENST00000261897.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12004680.hg.1	ENST00000380281.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12004680.hg.1	NM_001031698.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12004680.hg.1	NM_012272.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12004680.hg.1	TC12000377.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	ENST00000261897.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	ENST00000380281.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	ENST00000548825.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	NM_001031698.2	Refseq
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	NM_012272.2	Refseq
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	ENST00000261897.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	ENST00000380281.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	ENST00000548825.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	NM_001031698.2	Refseq
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	NM_012272.2	Refseq
Affymetrix Human Clariom D Assay	PSR1200199855.hg.1	TC1200012626.hg.1	Clariom D TC