Hs03674373_s1

• Gene Symbol: NKAPP1
• Gene Name: NFKB activating protein pseudogene 1
• Gene Aliases: CXorf42
• Chromosome Location: Chr.X: 120236452 - 120245267 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: NKAPP1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_027131.1		1	457		93
GenBank mRNA	AK093895.1	-	1	423		93
	BC022359.1	-	1	397		93
	BC113730.1	-	1	396		93
	BC113732.1	-	1	396		93
	BX537594.1	-	1	449		93
	DB004517.1	-	1	459		93

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	DB202379.1	-	1	423		Chr. X - 120240252 - 120245233 [-] on Build GRCh38	93
GenBankmRNA	AW611964.1	-	3			Chr. X - 120238209 - 120245035 [+] on Build GRCh38	93
GenBankmRNA	DA017113.1	-	1	401		Chr. X - 120240281 - 120245211 [-] on Build GRCh38	93
GenBankmRNA	BG527810.1	-	1	398		Chr. X - 120238193 - 120245207 [-] on Build GRCh38	93
GenBankmRNA	DA017116.1	-	1	402		Chr. X - 120240280 - 120245211 [-] on Build GRCh38	93
GenBankmRNA	DA951669.1	-	1	427		Chr. X - 120240260 - 120245237 [-] on Build GRCh38	93
GenBankmRNA	DA226807.1	-	1	401		Chr. X - 120240244 - 120245211 [-] on Build GRCh38	93
GenBankmRNA	BQ638190.1	-	1	251		Chr. X - 120221348 - 120245061 [-] on Build GRCh38	93
GenBankmRNA	DA196773.1	-	1	78		Chr. X - 120120953 - 120244888 [-] on Build GRCh38	93
GenBankmRNA	AW013941.1	-	3			Chr. X - 120238194 - 120244916 [+] on Build GRCh38	93

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	Rhox homeobox family member 2	RHOXF2	CT107, PEPP-2, PEPP2, THG1	-76.3kb	Anti-sense	Chr. X - 120158534 - 120164039 on NCBI Build GRCh38
Downstream	zinc finger and BTB domain containing 33	ZBTB33	ZNF-kaiso, ZNF348	5.5kb	Anti-sense	Chr. X - 120250752 - 120258396 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0X00011392.hg.1
This assay targets the same location as HTA transcript cluster(s) TC0X001323.hg.1

• Set Membership: Amplicon length between 86 and 100, Mammalian Gene Collection, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR0X017747.hg.1	TC0X001323.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR0X017747.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X017747.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X017747.hg.1	ENST00000555168.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X017747.hg.1	NR_027131.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000536487.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000536487.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000585790.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	ENST00000585790.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X017749.hg.1	TC0X001323.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR0X017749.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X017749.hg.1	NR_027131.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X017748.hg.1	TC0X001323.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR0X017748.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X017748.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X017748.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	ENST00000536487.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	ENST00000585790.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	ENST00000536487.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	ENST00000585790.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00179009.hg.1	TC0X00011392.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000536487.2	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000536487.2	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000585790.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	ENST00000585790.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00011392.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00179013.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179013.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00179013.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179013.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00179013.hg.1	TC0X00011392.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0X00179011.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179011.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179011.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00179011.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179011.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179011.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00179011.hg.1	TC0X00011392.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0X00179010.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179010.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179010.hg.1	ENST00000585790.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179010.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00179010.hg.1	ENST00000452254.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179010.hg.1	ENST00000554109.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179010.hg.1	ENST00000585790.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00179010.hg.1	NR_027131.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00179010.hg.1	TC0X00011392.hg.1	Clariom D TC