Hs03677577_m1

• Gene Symbol: LINC00473
• Gene Name: long intergenic non-protein coding RNA 473
• Gene Aliases: C6orf176, bA142J11.1
• Chromosome Location: Chr.6: 165924048 - 165988039 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: LINC00473
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_026861.1		1 - 2	508		82
GenBank mRNA	DA416538.1	-	1 - 2	466		82

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	DA216881.1	-	1 - 2	439		Chr. 6 - 165924554 - 165987970 [-] on Build GRCh38	82
GenBankmRNA	HY162240.1	-	1 - 2	419		Chr. 6 - 165924602 - 165987950 [-] on Build GRCh38	82
GenBankmRNA	DA111262.1	-	1 - 2	153		Chr. 6 - 165924256 - 165987684 [-] on Build GRCh38	82
GenBankmRNA	DA098126.1	-	1 - 2	443		Chr. 6 - 165924547 - 165987974 [-] on Build GRCh38	82
GenBankmRNA	HY161521.1	-	1 - 2	229		Chr. 6 - 165924431 - 165987760 [-] on Build GRCh38	82
GenBankmRNA	HY181269.1	-	1 - 2	405		Chr. 6 - 165924615 - 165987935 [-] on Build GRCh38	82
GenBankmRNA	DA399683.1	-	1 - 2	437		Chr. 6 - 165924538 - 165987968 [-] on Build GRCh38	82
GenBankmRNA	DA065760.1	-	1 - 2	520		Chr. 6 - 165924609 - 165988052 [-] on Build GRCh38	82

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	uncharacterized LOC105378114	LOC105378114		-148.1kb	Sense	Chr. 6 - 165773201 - 165788288 on NCBI Build GRCh38
Downstream	T brachyury transcription factor	T	SAVA, TFT	169.6kb	Sense	Chr. 6 - 166157644 - 166168669 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600014369.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06002302.hg.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Homo sapiens, Probe spans exons

Gene Ontology Categories:

Process(es)

transcription, DNA-templated

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR06028843.hg.1	TC06002302.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06028843.hg.1	NR_026861.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600203084.hg.1	NR_026861.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600203084.hg.1	NR_026861.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600203084.hg.1	TC0600014369.hg.1	Clariom D TC