Hs04189080_m1

• Gene Symbol: COL8A1
• Gene Name: collagen type VIII alpha 1
• Gene Aliases: C3orf7
• Chromosome Location: Chr.3: 99638596 - 99796733 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: COL8A1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001850.4	NP_001841.2	3 - 4	259		100
	NM_020351.3	NP_065084.2	2 - 3	197		100
GenBank mRNA	AY550974.1	-	1 - 2	57		100
	BC013581.1	-	3 - 4	237	3875911	100
	CA393523.1	-	2 - 3	183		100
	CN484310.1	-	2 - 3	183		100

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300008130.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03000502.hg.1

Additional Information:

This assay is in the 5'UTR region of the AY550974.1,BC013581.1,NM_001850.4,NM_020351.3 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Homo sapiens, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene COL8A1

Panther Classification:

Molecular Function -

extracellular matrix structural protein

Gene Ontology Categories:

Process(es)

angiogenesis
cell adhesion
positive regulation of cell-substrate adhesion
extracellular matrix organization
collagen catabolic process
endodermal cell differentiation
camera-type eye morphogenesis
epithelial cell proliferation

Function(s)

protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000462604.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000462604.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03009430.hg.1	TC03000502.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03009430.hg.1	ENST00000261037.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03009430.hg.1	ENST00000273342.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03009430.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03009430.hg.1	NM_020351.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03009429.hg.1	TC03000502.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03009429.hg.1	ENST00000261037.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03009429.hg.1	ENST00000273342.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03009429.hg.1	NM_001850.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03009429.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300157906.hg.1	TC0300008130.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300157908.hg.1	TC0300008130.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000261037.7	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000273342.8	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000452013.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000462604.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000462604.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000463753.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000474648.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000483969.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	ENST00000621757.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_001850.4	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq
Affymetrix Human Clariom D Assay	TC0300008130.hg.1	NM_020351.3	Refseq