Hs04274220_g1

• Gene Symbol: SLIT2-IT1
• Gene Name: SLIT2 intronic transcript 1
• Gene Aliases: -
• Chromosome Location: Chr.4: 20392189 - 20394856 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SLIT2-IT1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_037876.2		2 - 3	186		72
GenBank mRNA	BC041440.1	-	2 - 3	179		72
	BI831389.1	-	2 - 3	178		72
	BX089083.1	-	2 - 3	186		72

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AI953211.1	-	2 - 3			Chr. 4 - 20392247 - 20394766 [-] on Build GRCh38	72
GenBankmRNA	BF223189.1	-	2 - 3			Chr. 4 - 20392247 - 20394766 [-] on Build GRCh38	72
GenBankmRNA	AI203005.1	-	2 - 3			Chr. 4 - 20393349 - 20394766 [-] on Build GRCh38	72
GenBankmRNA	AW444976.1	-	2 - 3			Chr. 4 - 20392214 - 20394767 [-] on Build GRCh38	72

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	ligand dependent nuclear receptor corepressor like	LCORL	MLR1	-2.4mb	Anti-sense	Chr. 4 - 17841199 - 18023287 on NCBI Build GRCh38
Downstream	microRNA 218-1	MIR218-1	MIRN218-1, mir-218-1	134.6kb	Sense	Chr. 4 - 20528275 - 20528384 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0400007018.hg.1
This assay targets the same location as HTA transcript cluster(s) TC04000159.hg.1

• Set Membership: Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Homo sapiens, Probe spans exons

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR04002508.hg.1	TC04000159.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR04002508.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04002508.hg.1	NR_037876.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0400007018.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0400007018.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0400007018.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0400007018.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0400007018.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0400007018.hg.1	NR_037876.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0400007018.hg.1	NR_037876.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0400007018.hg.1	NR_037876.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0400007018.hg.1	NR_037876.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0400007018.hg.1	NR_037876.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR04002509.hg.1	TC04000159.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR04002509.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04002509.hg.1	NR_037876.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR04002507.hg.1	TC04000159.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR04002507.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR04002507.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	TC0400007018.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	TC0400007018.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	TC0400007018.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	TC0400007018.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	TC0400007018.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	TC0400007018.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	TC0400007018.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	TC0400007018.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	TC0400007018.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	TC0400007018.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400148180.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400148180.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400148180.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400148180.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400148180.hg.1	TC0400007018.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0400148179.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400148179.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400148179.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400148179.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400148179.hg.1	TC0400007018.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0400148181.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400148181.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400148181.hg.1	ENST00000515882.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400148181.hg.1	NR_037876.2	Refseq
Affymetrix Human Clariom D Assay	PSR0400148181.hg.1	TC0400007018.hg.1	Clariom D TC