Hs04404777_s1

Gene Symbol:

LINC01230 DMRT2

Gene Name:

long intergenic non-protein coding RNA 1230

doublesex and mab-3 related transcription factor 2

Gene Aliases:

TCONS_00015639, linc-DMRT2, lnc-DRMT2

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Chromosome Location:

Chr.9: 1048143 - 1048641 on Build GRCh38

Chromosome Location:

Chr.9: 1003237 - 1057554 on Build GRCh38

Species:

Human

Species Specific ID (Flybase ID):

-

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Assay Details

Gene Symbol: LINC01230
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_110643.1		1	120		74

Gene Symbol: DMRT2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_011517687.1	XP_011515989.1	2	1154		74

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	doublesex and mab-3 related transcription factor 3	DMRT3	DMRTA3	-56.4kb	Sense	Chr. 9 - 976968 - 991732 on NCBI Build GRCh38
Downstream	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	SMARCA2	BAF190, BRM, NCBRS, SNF2, SNF2L2, SNF2LA, SWI2, Sth1p, hBRM, hSNF2a	966.6kb	Sense	Chr. 9 - 2015219 - 2193624 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0900006457.hg.1

Additional Information:

This assay is in the 5'UTR region of the XM_011517687.1 transcripts.

• Set Membership: Amplicon length between 71 and 85, 3' Most, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
sex differentiation
biological_process
regulation of somitogenesis
positive regulation of transcription from RNA polymerase II promoter
embryonic skeletal system development
positive regulation of myotome development

Function(s)

RNA polymerase II regulatory region sequence-specific DNA binding
core promoter proximal region sequence-specific DNA binding
molecular_function
transcription factor activity, sequence-specific DNA binding
protein homodimerization activity
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	NR_110643.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900006457.hg.1	NR_110643.1	Refseq
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	NR_110643.1	Refseq
Affymetrix Human Clariom D Assay	TC0900006457.hg.1	NR_110643.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900144328.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900144328.hg.1	NR_110643.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900144328.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900144328.hg.1	NR_110643.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900144328.hg.1	TC0900006457.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0900144329.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900144329.hg.1	NR_110643.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900144329.hg.1	ENST00000625222.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900144329.hg.1	NR_110643.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900144329.hg.1	TC0900006457.hg.1	Clariom D TC