Hs04407050_m1

• Gene Symbol: LINC01396
• Gene Name: long intergenic non-protein coding RNA 1396
• Gene Aliases: -
• Chromosome Location: Chr.4: 4844437 - 4850827 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: LINC01396
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_125765.1		2 - 3	225		81
GenBank mRNA	AW195733.1	-	2 - 3			81

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	uncharacterized LOC101928279	LOC101928279		-59.1kb	Sense	Chr. 4 - 4761760 - 4787374 on NCBI Build GRCh38
Downstream	msh homeobox 1	MSX1	ECTD3, HOX7, HYD1, STHAG1	12.2kb	Sense	Chr. 4 - 4859665 - 4863936 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0400006655.hg.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Homo sapiens, Probe spans exons

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0400006655.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0400006655.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0400006655.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0400006655.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0400006655.hg.1	NR_125765.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0400006655.hg.1	NR_125765.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0400006655.hg.1	NR_125765.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0400006655.hg.1	NR_125765.1	Refseq
Affymetrix Human Clariom D Assay	TC0400006655.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Clariom D Assay	TC0400006655.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Clariom D Assay	TC0400006655.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Clariom D Assay	TC0400006655.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Clariom D Assay	TC0400006655.hg.1	NR_125765.1	Refseq
Affymetrix Human Clariom D Assay	TC0400006655.hg.1	NR_125765.1	Refseq
Affymetrix Human Clariom D Assay	TC0400006655.hg.1	NR_125765.1	Refseq
Affymetrix Human Clariom D Assay	TC0400006655.hg.1	NR_125765.1	Refseq
Affymetrix Human Clariom D Assay	PSR0400146103.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400146103.hg.1	NR_125765.1	Refseq
Affymetrix Human Clariom D Assay	PSR0400146103.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400146103.hg.1	NR_125765.1	Refseq
Affymetrix Human Clariom D Assay	PSR0400146103.hg.1	TC0400006655.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0400146104.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400146104.hg.1	NR_125765.1	Refseq
Affymetrix Human Clariom D Assay	PSR0400146104.hg.1	ENST00000609099.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0400146104.hg.1	NR_125765.1	Refseq
Affymetrix Human Clariom D Assay	PSR0400146104.hg.1	TC0400006655.hg.1	Clariom D TC